Institutions of the University of Bayreuth
Junior Professor Artificial Intelligence in Protein Science

Bodin, Stéphane ; Elhabashy, Hadeer ; Macdonald, Ewan ; Winter, Dominic ; Gauthier-Rouvière, Cécile:
Flotillins in membrane trafficking and physiopathology.
In: Biology of the Cell. Vol. 117 (2025) Issue 1 . - e2400134.
DOI: https://doi.org/10.1111/boc.202400134

Röhl, Alexander ; Netz, Eugen ; Kohlbacher, Oliver ; Elhabashy, Hadeer:
CLAUDIO: automated structural analysis of cross-linking data.
In: Bioinformatics. Vol. 40 (2024) Issue 4 . - btae146.
DOI: https://doi.org/10.1093/bioinformatics/btae146

Podobnik, Marco ; Singh, Ajeet P. ; Fu, Zhenqiang ; Dooley, Christopher M. ; Frohnhöfer, Hans Georg ; Firlej, Magdalena ; Stednitz, Sarah J. ; Elhabashy, Hadeer ; Weyand, Simone ; Weir, John R. ; Lu, Jianguo ; Nüsslein-Volhard, Christiane ; Irion, Uwe:
kcnj13 regulates pigment cell shapes in zebrafish and has diverged by cis-regulatory evolution between Danio species.
In: Development. Vol. 150 (2023) Issue 16 . - dev201627.
DOI: https://doi.org/10.1242/dev.201627

Elhabashy, Hadeer:
Method Development for Large-Scale Prediction and Modeling of Protein-Protein Interactions.
Tübingen , 2023
( Doctoral thesis, 2023 , Universität Tübingen)
DOI: https://doi.org/10.15496/publikation-90017

Elhabashy, Hadeer ; Netz, Eugen ; Kohlbacher, Oliver:
XLEC: Large-scale prediction and modeling of protein-protein interaction using sequence co-evolution and cross-linking data.
2023
Event: 11th Symposium on Structural Proteomics (SSP 2023) , 24-25 April 2023 , Utrecht, The Netherlands.
(Conference item: Conference , Speech )

Singh, Jasjot ; Elhabashy, Hadeer ; Muthukottiappan, Pathma ; Stepath, Markus ; Eisenacher, Martin ; Kohlbacher, Oliver ; Gieselmann, Volkmar ; Winter, Dominic:
Cross-linking of the endolysosomal system reveals potential flotillin structures and cargo.
In: Nature Communications. Vol. 13 (2022) . - 6212.
DOI: https://doi.org/10.1038/s41467-022-33951-0

Elhabashy, Hadeer ; Merino, Felipe ; Alva, Vikram ; Kohlbacher, Oliver ; Lupas, Andrei N.:
Exploring protein-protein interactions at the proteome level.
In: Structure. Vol. 30 (2022) Issue 4 . - pp. 462-475.
DOI: https://doi.org/10.1016/j.str.2022.02.004

Green, Anna G. ; Elhabashy, Hadeer ; Brock, Kelly P. ; Maddamsetti, Rohan ; Kohlbacher, Oliver ; Marks, Debora S.:
Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences.
In: Nature Communications. Vol. 12 (2021) . - 1396.
DOI: https://doi.org/10.1038/s41467-021-21636-z

Biggers, Laurence ; Elhabashy, Hadeer ; Ackad, Edward ; Yousef, Mohammad S.:
Molecular dynamics simulations of an engineered T4 lysozyme exclude helix to sheet transition, and provide insights into long distance, intra-protein switchable motion.
In: Protein Science. Vol. 29 (2020) Issue 2 . - pp. 542-554.
DOI: https://doi.org/10.1002/pro.3780

Kholmurodov, Kholmirzo T. ; Dushanov, Ermuhammad B. ; Krasavin, Evgenii A. ; Hassan, Hagar K. ; Elhabashy, Hadeer ; Galal, Ahmed ; Sweilam, Nasser H. ; Yasuoka, Kenji:
Molecular dynamics simulations of the DNA interaction with metallic nanoparticles and TiO₂ surfaces.
In: Models in Bioscience and Materials Research : Molecular Dynamics and Related Techniques. - New York : Nova Science Publishers, 2013 . - pp. 167-200