Veröffentlichungen "Knauer, Stefan H."

2022

Zuber, Philipp ; Daviter, Tina ; Heißmann, Ramona ; Persau, Ulrike ; Schweimer, Kristian ; Knauer, Stefan H.:
Structural and thermodynamic analyses of the β-to-α transformation in RfaH reveal principles of fold-switching proteins.
In: eLife. Bd. 11 (2022) . - e76630.
ISSN 2050-084X
DOI: https://doi.org/10.7554/eLife.76630

2021

Raynal, Betrand ; Brûlé, Sébastien ; Uebel, Stephan ; Knauer, Stefan H.:
Assessing and Improving Protein Sample Quality.
In: Daviter, Tina ; Johnson, Christopher M. ; McLaughlin, Stephen H. ; Williams, Mark A. (Hrsg.): Protein-Ligand Interactions : Methods and Applications. - New York : Springer , 2021 . - S. 3-46 . - (Methods in Molecular Biology ; 2263 )
ISBN 978-1-0716-1197-5
DOI: https://doi.org/10.1007/978-1-0716-1197-5_1

de Marco, Ario ; Berrow, Nick ; Lebendiker, Mario ; Garcia-Alai, Maria ; Knauer, Stefan H. ; Lopez-Mendez, Blanca ; Matagne, André ; Parret, Annabel ; Remans, Kim ; Uebel, Stephan ; Raynal, Bertrand:
Quality control of protein reagents for the improvement of research data reproducibility.
In: Nature Communications. Bd. 12 (2021) . - 2795.
ISSN 2041-1723
DOI: https://doi.org/10.1038/s41467-021-23167-z

Berrow, Nick ; de Marco, Ario ; Lebendiker, Mario ; Garcia-Alai, Maria ; Knauer, Stefan H. ; Lopez-Mendetz, Blanca ; Matagne, André ; Parret, Annabel ; Remans, Kim ; Uebel, Stephan ; Raynal, Bertrand:
Quality control of purified proteins to improve data quality and reproducibility : results from a large-scale survey.
In: European Biophysics Journal with Biophysics Letters. Bd. 50 (2021) . - S. 453-460.
ISSN 1432-1017
DOI: https://doi.org/10.1007/s00249-021-01528-2

López-Méndez, Blanca ; Baron, Bruno ; Brautigam, Chad A. ; Jowitt, Thomas A. ; Knauer, Stefan H. ; Uebel, Stephan ; Williams, Mark A. ; Sedivy, Arthur ; Abian, Olga ; Abreu, Celeste ; Adamczyk, Malgorzata ; Bal, Wojciech ; Berger, Sylvie ; Buell, Alexander K. ; Carolis, Carlo ; Daviter, Tina ; Fish, Alexander ; Garcia-Alai, Maria ; Guenther, Christian ; Hamacek, Josef ; Hoková, Jitka ; Houser, Josef ; Johnson, Chris ; Kelly, Sharon ; Leech, Andrew ; Mas, Caroline ; Matulis, Daumantas ; McLaughlin, Stephen H. ; Montserret, Roland ; Nasreddine, Rouba ; Nehmé, Reine ; Nguyen, Quyen ; Ortega-Alarcón, David ; Perez, Kathryn ; Pirc, Katja ; Piszczek, Grzegorz ; Podobnik, Marjetka ; Rodrigo, Natalia ; Rokov-Plavec, Jasmina ; Schäfer, Susanne ; Sharpe, Tim ; Southall, June ; Staunton, David ; Tavares, Pedro ; Vanek, Ondrej ; Weyand, Michael ; Wu, Di:
Reproducibility and accuracy of microscale thermophoresis in the NanoTemper Monolith : a multi laboratory benchmark study.
In: European Biophysics Journal with Biophysics Letters. Bd. 50 (2021) . - S. 411-427.
ISSN 1432-1017
DOI: https://doi.org/10.1007/s00249-021-01532-6

2020

Galaz-Davison, Pablo ; Molina, José Alejandro ; Silletti, Steve ; Komives, Elizabeth A. ; Knauer, Stefan H. ; Artsimovitch, Irina ; Ramírez-Sarmiento, César A.:
Differential local stability governs the metamorphic fold-switch of bacterial virulence factor RfaH.
In: Biophysical Journal. Bd. 118 (2020) Heft 1 . - S. 96-104.
ISSN 1542-0086
DOI: https://doi.org/10.1016/j.bpj.2019.11.014

Washburn, Robert S. ; Zuber, Philipp ; Sun, Ming ; Hashem, Yaser ; Shen, Bingxin ; Li, Wen ; Harvey, Sho ; Reyes, Francisco J. Acosta ; Gottesman, Max E. ; Knauer, Stefan H. ; Frank, Joachim:
Escherichia coli NusG links the lead ribosome with the transcription elongation complex.
In: iScience. Bd. 23 (2020) Heft 8 . - 101352.
ISSN 2589-0042
DOI: https://doi.org/10.1016/j.isci.2020.101352

Dudenhöffer, Benjamin R. ; Borggräfe, Jan ; Schweimer, Kristian ; Knauer, Stefan H.:
NusA directly interacts with antitermination factor Q from phage λ.
In: Scientific Reports. Bd. 10 (2020) . - 6607.
ISSN 2045-2322
DOI: https://doi.org/10.1038/s41598-020-63523-5

2019

Artsimovitch, Irina ; Knauer, Stefan H.:
Ancient Transcription Factors in the News.
In: mBio. Bd. 10 (2019) Heft 1 . - e01547-18.
ISSN 2150-7511
DOI: https://doi.org/10.1128/mBio.01547-18

Zuber, Philipp ; Schweimer, Kristian ; Rösch, Paul ; Artsimovitch, Irina ; Knauer, Stefan H.:
Reversible fold-switching controls the functional cycle of the antitermination factor RfaH.
In: Nature Communications. Bd. 10 (2019) . - 702.
ISSN 2041-1723
DOI: https://doi.org/10.1038/s41467-019-08567-6

Dudenhöffer, Benjamin R. ; Schneider, Hans ; Schweimer, Kristian ; Knauer, Stefan H.:
SuhB is an integral part of the ribosomal antitermination complex and interacts with NusA.
In: Nucleic Acids Research. Bd. 47 (2019) Heft 12 . - S. 6504-6518.
ISSN 1362-4962
DOI: https://doi.org/10.1093/nar/gkz442

2018

Zuber, Philipp ; Hahn, Lukas ; Reinl, Anne ; Schweimer, Kristian ; Knauer, Stefan H. ; Gottesman, Max E. ; Rösch, Paul ; Wöhrl, Birgitta M.:
Structure and nucleic acid binding properties of KOW domains 4 and 6–7 of human transcription elongation factor DSIF.
In: Scientific Reports. Bd. 8 (2018) . - 11660.
ISSN 2045-2322
DOI: https://doi.org/10.1038/s41598-018-30042-3

Zuber, Philipp ; Artsimovitch, Irina ; NandyMazumdar, Monali ; Liu, Zhaokun ; Nedialkov, Yuri ; Schweimer, Kristian ; Rösch, Paul ; Knauer, Stefan H.:
The universally-conserved transcription factor RfaH is recruited to a hairpin structure of the non-template DNA strand.
In: eLife. Bd. 7 (2018) . - e36349.
ISSN 2050-084X
DOI: https://doi.org/10.7554/eLife.36349

2017

Drögemüller, Johanna ; Schneider, Christin ; Schweimer, Kristian ; Strauß, Martin ; Wöhrl, Birgitta M. ; Rösch, Paul ; Knauer, Stefan H.:
Thermotoga maritima NusG : domain interaction mediates autoinhibition and thermostability.
In: Nucleic Acids Research. Bd. 45 (2017) Heft 1 . - S. 446-460.
ISSN 1362-4962
DOI: https://doi.org/10.1093/nar/gkw1111

2016

Strauß, Martin ; Vitiello, Christal ; Schweimer, Kristian ; Gottesman, Max E. ; Rösch, Paul ; Knauer, Stefan H.:
Transcription is regulated by NusA:NusG interaction.
In: Nucleic Acids Research. Bd. 44 (2016) Heft 12 . - S. 5971-5982.
ISSN 1362-4962
DOI: https://doi.org/10.1093/nar/gkw423

2015

Drögemüller, Johanna ; Strauß, Martin ; Schweimer, Kristian ; Jurk, Marcel ; Rösch, Paul ; Knauer, Stefan H.:
Determination of RNA polymerase binding surfaces of transcription factors by NMR spectroscopy.
In: Scientific Reports. Bd. 5 (2015) . - 16428.
ISSN 2045-2322
DOI: https://doi.org/10.1038/srep16428

Drögemüller, Johanna ; Strauß, Martin ; Schweimer, Kristian ; Wöhrl, Birgitta M. ; Knauer, Stefan H. ; Rösch, Paul:
Exploring RNA polymerase regulation by NMR spectroscopy.
In: Scientific Reports. Bd. 5 (2015) . - 10825.
ISSN 2045-2322
DOI: https://doi.org/10.1038/srep10825

2013

Tomar, Sushil Kumar ; Knauer, Stefan H. ; NandyMazumdar, Monali ; Rösch, Paul ; Artsimovitch, Irina:
Interdomain contacts control folding of transcription factor RfaH.
In: Nucleic Acids Research. Bd. 41 (2013) Heft 22 . - S. 10077-10085.
ISSN 1362-4962
DOI: https://doi.org/10.1093/nar/gkt779

Knauer, Stefan H. ; Rösch, Paul ; Artsimovitch, Irina:
Transformers : the science, not the fiction.
In: Protein Data Bank in Europe.
2013

2012

Knauer, Stefan H. ; Hartl-Spiegelhauer, Olivia ; Schwarzinger, Stephan ; Hänzelmann, Petra ; Dobbek, Holger:
The Fe(II)/α-ketoglutarate-dependent taurine dioxygenases from Pseudomonas putida and Escherichia coli are tetramers.
In: The FEBS Journal. Bd. 279 (2012) Heft 5 . - S. 816-831.
ISSN 1742-4658
DOI: https://doi.org/10.1111/j.1742-4658.2012.08473.x

Burmann, Björn M. ; Knauer, Stefan H. ; Sevostyanova, Anastasia ; Schweimer, Kristian ; Mooney, Rachel A. ; Landick, Robert ; Artsimovitch, Irina ; Rösch, Paul:
An α helix to β barrel domain switch transforms the transcription factor RfaH into a translation factor.
In: Cell. Bd. 150 (2012) Heft 2 . - S. 291-303.
ISSN 1097-4172
DOI: https://doi.org/10.1016/j.cell.2012.05.042

Knauer, Stefan H. ; Buckel, Wolfgang ; Dobbek, Holger:
On the ATP-dependent activation of the radical enzyme (R)-2-hydroxyisocaproyl-CoA dehydratase.
In: Biochemistry. Bd. 51 (2012) Heft 33 . - S. 6609-6622.
ISSN 1520-4995
DOI: https://doi.org/10.1021/bi300571z

Knauer, Stefan H. ; Rösch, Paul ; Artsimovitch, Irina:
Transformation : The next level of regulation.
In: RNA Biology. Bd. 9 (2012) Heft 12 . - S. 1418-1423.
ISSN 1555-8584
DOI: https://doi.org/10.4161/rna.22724

Knauer, Stefan H. ; Artsimovitch, Irina ; Rösch, Paul:
Transformer proteins.
In: Cell Cycle. Bd. 11 (2012) Heft 23 . - S. 4289-4290.
ISSN 1551-4005
DOI: https://doi.org/10.4161/cc.22468

2011

Knauer, Stefan H. ; Buckel, Wolfgang ; Dobbek, Holger:
Structural Basis for Reductive Radical Formation and Electron Recycling in (R)-2-Hydroxyisocaproyl-CoA Dehydratase.
In: Journal of the American Chemical Society. Bd. 133 (2011) Heft 12 . - S. 4342-4347.
ISSN 1520-5126
DOI: https://doi.org/10.1021/ja1076537

Knauer, Stefan H.:
Strukturelle Untersuchungen an dem Radikalenzym (R)-2-Hydroxyisocaproyl-CoA-Dehydratase.
Bayreuth , 2011
( Dissertation, 2011 , Universität Bayreuth, Fakultät für Biologie, Chemie und Geowissenschaften)

2010

Spiegelhauer, Olivia ; Mende, Sophia ; Dickert, Frank ; Knauer, Stefan H. ; Ullmann, G. Matthias ; Dobbek, Holger:
Cysteine as a modulator residue in the active site of xenobiotic reductase A : a structural, thermodynamic and kinetic study.
In: Journal of Molecular Biology. Bd. 398 (2010) Heft 1 . - S. 66-82.
ISSN 0022-2836
DOI: https://doi.org/10.1016/j.jmb.2010.02.044

Spiegelhauer, Olivia ; Werther, T. ; Mende, Sophia ; Knauer, Stefan H. ; Dobbek, Holger:
Determinants of Substrate Binding and Protonation in the Flavoenzyme Xenobiotic Reductase A.
In: Journal of Molecular Biology. Bd. 403 (2010) Heft 2 . - S. 286-298.
ISSN 0022-2836
DOI: https://doi.org/10.1016/j.jmb.2010.08.047