Publications "Ferruz, Noelia"

Article in a journal

Ferruz, Noelia ; Höcker, Birte:
Dreaming ideal protein structures.
In: Nature Biotechnology. Vol. 40 (2022) Issue 2 . - pp. 171-172.
ISSN 1546-1696
DOI: https://doi.org/10.1038/s41587-021-01196-9

Ferruz, Noelia ; Schmidt, Steffen ; Höcker, Birte:
ProtGPT2 is a deep unsupervised language model for protein design.
In: Nature Communications. Vol. 13 (2022) . - 4348.
ISSN 2041-1723
DOI: https://doi.org/10.1038/s41467-022-32007-7

Ferruz, Noelia ; Höcker, Birte:
Controllable protein design with language models.
In: Nature Machine Intelligence. Vol. 4 (2022) . - pp. 521-532.
ISSN 2522-5839
DOI: https://doi.org/10.1038/s42256-022-00499-z

Kröger, Pascal ; Shanmugaratnam, Sooruban ; Ferruz, Noelia ; Schweimer, Kristian ; Höcker, Birte:
A comprehensive binding study illustrates ligand recognition in the periplasmic binding protein PotF.
In: Structure. Vol. 29 (2021) Issue 5 . - pp. 433-443.
ISSN 0969-2126
DOI: https://doi.org/10.1016/j.str.2020.12.005

Ferruz, Noelia ; Michel, Florian ; Lobos, Francisco ; Schmidt, Steffen ; Höcker, Birte:
Fuzzle 2.0 : Ligand Binding in Natural Protein Building Blocks.
In: Frontiers in Molecular Biosciences. Vol. 8 (2021) . - 715972.
ISSN 2296-889X
DOI: https://doi.org/10.3389/fmolb.2021.715972

Ferruz, Noelia ; Schmidt, Steffen ; Höcker, Birte:
ProteinTools : a toolkit to analyze protein structures.
In: Nucleic Acids Research. Vol. 49 (2021) Issue W1 . - W559-W566.
ISSN 1362-4962
DOI: https://doi.org/10.1093/nar/gkab375

Ferruz, Noelia ; Lobos, Francisco ; Lemm, Dominik ; Toledo-Patiño, Saacnicteh ; Farías-Rico, José Arcadio ; Schmidt, Steffen ; Höcker, Birte:
Identification and Analysis of Natural Building Blocks for Evolution-Guided Fragment-Based Protein Design.
In: Journal of Molecular Biology. Vol. 432 (2020) Issue 13 . - pp. 3898-3914.
ISSN 0022-2836
DOI: https://doi.org/10.1016/j.jmb.2020.04.013

Lechner, Horst ; Ferruz, Noelia ; Höcker, Birte:
Strategies for designing non-natural enzymes and binders.
In: Current Opinion in Chemical Biology. Vol. 47 (2018) . - pp. 67-76.
ISSN 1879-0402
DOI: https://doi.org/10.1016/j.cbpa.2018.07.022