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ScatterJn : An ImageJ Plugin for Scatterplot-Matrix Analysis and Classification of Spatially Resolved Analytical Microscopy Data

Title data

Zeitvogel, Fabian ; Obst, Martin:
ScatterJn : An ImageJ Plugin for Scatterplot-Matrix Analysis and Classification of Spatially Resolved Analytical Microscopy Data.
In: Journal of Open Research Software. Vol. 4 (2016) Issue 1 . - e5.
ISSN 2049-9647
DOI: https://doi.org/10.5334/jors.89

Official URL: Volltext

Abstract in another language

We present ScatterJn, an ImageJ (and Fiji) plugin for scatterplot-based exploration and analysis of analytical microscopy data. In contrast to commonly used scatterplot tools, it handles more than two input images (or image stacks, respectively) by creating a matrix of pairwise scatterplots. The tool offers the possibility to manually classify pixels by selecting regions of datapoints in the scatterplots as well as in the spatial domain. We demonstrate its functioning using a set of elemental maps acquired by SEM-EDX mapping of a soil sample. The plugin is available at https://savannah.nongnu.org/projects/scatterjn.

Further data

Item Type: Article in a journal
Refereed: Yes
Additional notes: BAYCEER135304
Institutions of the University: Research Institutions
Research Institutions > Research Centres
Research Institutions > Research Centres > Bayreuth Center of Ecology and Environmental Research- BayCEER
Result of work at the UBT: Yes
DDC Subjects: 500 Science
Date Deposited: 05 Aug 2016 10:57
Last Modified: 05 Aug 2016 10:57
URI: https://eref.uni-bayreuth.de/id/eprint/33853