Zeitschrift: Applied and Environmental Microbiology

2021

Jakus, Natalia ; Blackwell, Nia ; Osenbrück, Karsten ; Straub, Daniel ; Byrne, James M. ; Wang, Zhe ; Glöckler, David ; Elsner, Martin ; Lüders, Tillmann ; Grathwohl, Peter ; Kleindienst, Sara ; Kappler, Andreas:
Nitrate removal by a novel lithoautotrophic nitrate-reducing iron(II)-oxidizing culture enriched from a pyrite-rich limestone aquifer.
In: Applied and Environmental Microbiology. Bd. 87 (2021) Heft 16 .
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00460-21

Pfeiffer, Daniel ; Herz, Julian ; Schmiedel, Julia ; Popp, Felix ; Schüler, Dirk:
Spatiotemporal Organization of Chemotaxis Pathways in Magnetospirillum gryphiswaldense.
In: Applied and Environmental Microbiology. Bd. 87 (2021) Heft 1 .
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.02229-20

2020

Pfeiffer, Daniel ; Schüler, Dirk:
Quantifying the Benefit of a Dedicated "Magnetoskeleton" in Bacterial Magnetotaxis by Live-Cell Motility Tracking and Soft Agar Swimming Assay.
In: Applied and Environmental Microbiology. Bd. 86 (2020) Heft 3 .
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01976-19

Braga, Daniel ; Hasan, Mahmudul ; Kröber, Tabea ; Last, Daniel ; Lackner, Gerald:
Redox coenzyme F₄₂₀ biosynthesis in Thermomicrobia involves reduction by stand-alone nitroreductase superfamily enzymes.
In: Applied and Environmental Microbiology. Bd. 86 (2020) Heft 12 .
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00457-20

2019

Zeibich, Lydia ; Staege, Maraike ; Schmidt, Oliver ; Drake, Harold L.:
Amino acids and ribose : drivers of protein and RNA fermentation by ingested bacteria of a primitive gut ecosystem.
In: Applied and Environmental Microbiology. Bd. 85 (2019) Heft 19 . - e01297-19.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01297-19

Rosenfeldt, Sabine ; Riese, Cornelius N. ; Mickoleit, Frank ; Schüler, Dirk ; Schenk, Anna:
Probing the nanostructure and arrangement of bacterial magnetosomes by small-angle x-ray scattering.
In: Applied and Environmental Microbiology. Bd. 85 (2019) Heft 24 . - e01513-19.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01513-19

2018

Meier, Anja ; Hunger, Sindy ; Drake, Harold L.:
Differential engagement of fermentative taxa in gut contents of the earthworm Lumbricus terrestris.
In: Applied and Environmental Microbiology. Bd. 84 (2018) Heft 5 . - e01851-17.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01851-17

Tay, Andy ; Pfeiffer, Daniel ; Rowe, Kathryn ; Tannenbaum, Aaron ; Popp, Felix ; Strangeway, Robert ; Schüler, Dirk ; Di Carlo, Dino:
High-Throughput Microfluidic Sorting of Live Magnetotactic Bacteria.
In: Applied and Environmental Microbiology. Bd. 84 (2018) Heft 17 . - e01308-18.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01308-18

Zeibich, Lydia ; Schmidt, Oliver ; Drake, Harold L.:
Protein- and RNA-Enhanced Fermentation by Gut Microbiota of the Earthworm Lumbricus terrestris.
In: Applied and Environmental Microbiology. Bd. 84 (2018) Heft 11 . - e00657-18.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00657-18

2017

Nordhoff, Mark ; Tominski, Claudia ; Halama, Max ; Byrne, James ; Obst, Martin ; Kleindienst, Sara ; Behrens, Sebastian ; Kappler, Andreas:
Insights into Nitrate-Reducing Fe(II) Oxidation Mechanisms through Analysis of Cell-Mineral Associations, Cell Encrustation, and Mineralogy in the Chemolithoautotrophic Enrichment Culture KS.
In: Applied and Environmental Microbiology. Bd. 83 (2017) Heft 13 . - e00752-17.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00752-17

Laufer, Katja ; Nordhoff, Mark ; Halama, Max ; Martinez, Raul E. ; Obst, Martin ; Nowak, Marcus ; Stryhanyuk, Hryhoriy ; Richnow, Hans-Hermann ; Kappler, Andreas:
Microaerophilic Fe(II)-Oxidizing Zetaproteobacteria Isolated from Low-Fe Marine Coastal Sediments : Physiology and Composition of Their Twisted Stalks.
In: Applied and Environmental Microbiology. Bd. 83 (2017) Heft 8 . - e03118-16.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.03118-16

Zhu, Baoli ; Bradford, Lauren ; Huang, Sichao ; Szalay, Anna R. ; Leix, Carmen ; Weissbach, Max ; Táncsics, András ; Drewes, Jörg E. ; Lüders, Tillmann:
Unexpected Diversity and High Abundance of Putative Nitric Oxide Dismutase (Nod) Genes in Contaminated Aquifers and Wastewater Treatment Systems.
In: Applied and Environmental Microbiology. Bd. 83 (2017) Heft 4 . - e02750-16.
ISSN 1098-5336
DOI: https://doi.org/10.1128/aem.02750-16

Brandenburger, Eileen ; Gressler, Markus ; Leonhardt, Robin ; Lackner, Gerald ; Habel, Andreas ; Hertweck, Christian ; Brock, Matthias ; Hoffmeister, Dirk:
A highly conserved basidiomycete peptide synthetase produces a trimeric hydroxamate siderophore.
In: Applied and Environmental Microbiology. Bd. 83 (2017) Heft 21 . - e01478-17.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01478-17

2016

Lohße, Anna ; Kolinko, Isabel ; Raschdorf, Oliver ; Uebe, René ; Borg, Sarah ; Brachmann, Andreas ; Plitzko, Jürgen M. ; Müller, Rolf ; Zhang, Youming ; Schüler, Dirk:
Overproduction of Magnetosomes by Genomic Amplification of Biosynthesis-Related Gene Clusters in a Magnetotactic Bacterium.
In: Applied and Environmental Microbiology. Bd. 82 (2016) Heft 10 . - S. 3032-3041.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.03860-15

Wick, Jonas ; Heine, Daniel ; Lackner, Gerald ; Misiek, Mathias ; Tauber, James ; Jagusch, Hans ; Hertweck, Christian ; Hoffmeister, Dirk:
A fivefold parallelized biosynthetic process secures chlorination of Armillaria mellea (Honey Mushroom) toxins.
In: Applied and Environmental Microbiology. Bd. 82 (2016) Heft 4 . - S. 1196-1204.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.03168-15

2015

Drake, Harold L.:
Editorial: PilZ Domain Proteins of the Plant Pathogen Xanthomonas oryzae pv. oryzae Function Differentially in Virulence.
In: Applied and Environmental Microbiology. Bd. 81 (2015) Heft 13 . - S. 4233-4234.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01322-15

Jay, Zackary J. ; Beam, Jacob P. ; Dohnalkova, Alice ; Lohmayer, Regina ; Bodle, Brynna ; Planer-Friedrich, Britta ; Romine, Margie ; Inskeep, William P.:
Pyrobaculum yellowstonensis strain WP30 respires on elemental sulfur and/or arsenate in circumneutral sulfidic geothermal sediments of Yellowstone National Park.
In: Applied and Environmental Microbiology. Bd. 81 (2015) Heft 17 . - S. 5907-5916.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01095-15

Muehe, E. Marie ; Weigold, Pascal ; Adaktylou, Irini J. ; Planer-Friedrich, Britta ; Krämer, Ute ; Kappler, Andreas ; Behrens, Sebastian:
Rhizosphere microbial community composition affects cadmium and zinc uptake of the metal-hyperaccumulating plant Arabidopsis halleri.
In: Applied and Environmental Microbiology. Bd. 81 (2015) Heft 6 . - S. 2173-2181.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.03359-14

Kalb, Daniel ; Heinekamp, Thorsten ; Lackner, Gerald ; Scharf, Daniel H. ; Dahse, Hans-Martin ; Brakhage, Axel A. ; Hoffmeister, Dirk:
Genetic engineering activates biosynthesis of aromatic fumaric acid amides in the human pathogen Aspergillus fumigatus.
In: Applied and Environmental Microbiology. Bd. 81 (2015) Heft 5 . - S. 1594-1600.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.03268-14

2014

Borg, Sarah ; Hofmann, Julia ; Pollithy, Anna ; Lang, Claus ; Schüler, Dirk:
New Vectors for Chromosomal Integration Enable High-Level Constitutive or Inducible Magnetosome Expression of Fusion Proteins in Magnetospirillum gryphiswaldense.
In: Applied and Environmental Microbiology. Bd. 80 (2014) Heft 8 . - S. 2609-2616.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00192-14

Klueglein, Nicole ; Zeitvogel, Fabian ; Stierhof, York-D. ; Floetenmeyer, Matthias ; Konhauser, Kurt O. ; Kappler, Andreas ; Obst, Martin:
Potential Role of Nitrite for Abiotic Fe(II) Oxidation and Cell Encrustation during Nitrate Reduction by Denitrifying Bacteria.
In: Applied and Environmental Microbiology. Bd. 80 (2014) Heft 3 . - S. 1051-1061.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.03277-13

Lohmayer, Regina ; Kappler, Andreas ; Lösekann-Behrens, Tina ; Planer-Friedrich, Britta:
Sulfur species as redox partners and electron shuttles for ferrihydrite reduction by Sulfurospirillum deleyianum.
In: Applied and Environmental Microbiology. Bd. 80 (2014) Heft 10 . - S. 3141-3149.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.04220-13

Raschdorf, Oliver ; Plitzko, Jürgen M. ; Schüler, Dirk ; Müller, Frank D. ; Parales, R. E.:
A Tailored galK Counterselection System for Efficient Markerless Gene Deletion and Chromosomal Tagging in Magnetospirillum gryphiswaldense.
In: Applied and Environmental Microbiology. Bd. 80 (2014) Heft 14 . - S. 4323-4330.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00588-14

Kalb, Daniel ; Lackner, Gerald ; Hoffmeister, Dirk:
Functional and phylogenetic divergence of fungal adenylate-forming reductases.
In: Applied and Environmental Microbiology. Bd. 80 (2014) Heft 19 . - S. 6175-6183.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01767-14

2013

Katzmann, E. ; Eibauer, M. ; Lin, W. ; Pan, Y. ; Plitzko, J. M. ; Schüler, Dirk:
Analysis of Magnetosome Chains in Magnetotactic Bacteria by Magnetic Measurements and Automated Image Analysis of Electron Micrographs.
In: Applied and Environmental Microbiology. Bd. 79 (2013) Heft 24 . - S. 7755-7762.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.02143-13

Chatzinotas, Antonis ; Schellenberger, Stefanie ; Glaser, Karin ; Kolb, Steffen:
Assimilation of cellulose-derived carbon by microeukaryotes in oxic and anoxic slurries of an aerated soil.
In: Applied and Environmental Microbiology. Bd. 79 (2013) Heft 18 . - S. 5777-5781.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01598-13

von Netzer, Frederick ; Pilloni, Giovanni ; Kleindienst, Sara ; Krüger, Martin ; Knittel, Katrin ; Gründger, Friederike ; Lüders, Tillmann:
Enhanced Gene Detection Assays for Fumarate-Adding Enzymes Allow Uncovering of Anaerobic Hydrocarbon Degraders in Terrestrial and Marine Systems.
In: Applied and Environmental Microbiology. Bd. 79 (2013) Heft 2 . - S. 543-552.
ISSN 1098-5336
DOI: https://doi.org/10.1128/aem.02362-12

Hao, Likai ; Li, Jianli ; Kappler, Andreas ; Obst, Martin:
Mapping of Heavy Metal Ion Sorption to Cell-Extracellular Polymeric Substance-Mineral Aggregates by Using Metal-Selective Fluorescent Probes and Confocal Laser Scanning Microscopy.
In: Applied and Environmental Microbiology. Bd. 79 (2013) Heft 21 . - S. 6524-6534.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.02454-13

Steinchen, Wieland ; Lackner, Gerald ; Yasmin, Sabiha ; Schrettl, Markus ; Dahse, Hans-Martin ; Haas, Hubertus ; Hoffmeister, Dirk:
Bimodular peptide synthetase SidE produces fumarylalanine in the human pathogen aspergillus fumigatus.
In: Applied and Environmental Microbiology. Bd. 79 (2013) Heft 21 . - S. 6670-6676.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.02642-13

2012

Palmer, Katharina ; Horn, Marcus A.:
Actinobacterial nitrate reducers and Proteobacterial denitrifiers are abundant in N2O-metabolizing palsa peat.
In: Applied and Environmental Microbiology. Bd. 78 (2012) Heft 16 . - S. 5584-5596.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00810-12

Küchler, Stefan ; Renz, Patricia ; Dettner, Konrad ; Kehl, Siegfried:
Diversity of symbiotic organs and bacterial endosymbionts among lygaeoid bugs of the families Blissidae and Lygaeidae (Hemiptera: Heteroptera: Lygaeoidea).
In: Applied and Environmental Microbiology. Bd. 78 (2012) Heft 8 . - S. 2648-2659.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.07191-11

Depkat-Jakob, Peter ; Hunger, Sindy ; Schulz, Kristin ; Brown, George G. ; Tsai, Siu M. ; Drake, Harold L.:
Emission of methane by Eudrilus eugeniae and other earthworms from Brazil.
In: Applied and Environmental Microbiology. Bd. 78 (2012) Heft 8 . - S. 3014-3019.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.07949-11

Lefèvre, Christopher T. ; Schmidt, Marian L. ; Viloria, Nathan ; Trubitsyn, Denis ; Schüler, Dirk ; Bazylinski, Dennis A.:
Insight into the Evolution of Magnetotaxis in Magnetospirillum spp., Based on mam Gene Phylogeny.
In: Applied and Environmental Microbiology. Bd. 78 (2012) Heft 20 . - S. 7238-7248.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01951-12

2011

Beckmann, Sabrina ; Lüders, Tillmann ; Krüger, Martin ; von Netzer, Frederick ; Engelen, Bert ; Cypionka, Heribert:
Acetogens and Acetoclastic Methanosarcinales Govern Methane Formation in Abandoned Coal Mines.
In: Applied and Environmental Microbiology. Bd. 77 (2011) Heft 11 . - S. 3749-3756.
ISSN 1098-5336
DOI: https://doi.org/10.1128/aem.02818-10

Küchler, Stefan ; Dettner, Konrad ; Kehl, Siegfried:
Characterization of an obligate intracellular bacterium in midgut epithelium of bulrush bug Chilacis typhae (Heteroptera, Lygaeidae, Artheneinae).
In: Applied and Environmental Microbiology. Bd. 77 (2011) Heft 9 . - S. 2869-2876.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.02983-10

Hunger, Sindy ; Schmidt, Oliver ; Hilgarth, Maik ; Horn, Marcus A. ; Kolb, Steffen ; Conrad, Ralf ; Drake, Harold L.:
Competing formate- and carbon dioxide-utilizing prokaryotes in an anoxic methane-emitting fen soil.
In: Applied and Environmental Microbiology. Bd. 77 (2011) Heft 11 . - S. 3773-3785.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00282-11

Schellenberger, Stefanie ; Drake, Harold L. ; Kolb, Steffen:
Functionally redundant cellobiose-degrading soil bacteria respond differentially to oxygen.
In: Applied and Environmental Microbiology. Bd. 77 (2011) Heft 17 . - S. 6043-6048.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00564-11

Pollithy, Anna ; Romer, Tina ; Lang, Claus ; Müller, Frank D. ; Helma, Jonas ; Leonhardt, Heinrich ; Rothbauer, Ulrich ; Schüler, Dirk:
Magnetosome Expression of Functional Camelid Antibody Fragments (Nanobodies) in Magnetospirillum gryphiswaldense.
In: Applied and Environmental Microbiology. Bd. 77 (2011) Heft 17 . - S. 6165-6171.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.05282-11

Lin, Wei ; Jogler, Christian ; Schüler, Dirk ; Pan, Yongxin:
Metagenomic Analysis Reveals Unexpected Subgenomic Diversity of Magnetotactic Bacteria within the Phylum Nitrospirae.
In: Applied and Environmental Microbiology. Bd. 77 (2011) Heft 1 . - S. 323-326.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01476-10

Schmidt, Oliver ; Kaul, Pia ; Hellmuth, Susanne ; Borst, Katharina ; Horn, Marcus A. ; Drake, Harold L.:
Novel [NiFe]- and [FeFe]-hydrogenase gene transcripts indicative of active facultative aerobes and obligate anaerobes in earthworm gut contents.
In: Applied and Environmental Microbiology. Bd. 77 (2011) Heft 17 . - S. 5842-5850.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.05432-11

Hunger, Sindy ; Gößner, Anita S. ; Drake, Harold L.:
Trophic links between the acetogen Clostridium glycolicum KHa and the fermentative anaerobe Bacteroides xylanolyticus KHb, isolated from Hawaiian forest soil.
In: Applied and Environmental Microbiology. Bd. 77 (2011) Heft 17 . - S. 6281-6285.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.05519-11

2010

Zaprasis, Adrienne ; Liu, Ya-Jun ; Liu, Shuang-Jiang ; Drake, Harold L. ; Horn, Marcus A.:
Abundance of novel and diverse tfdA-like genes, encoding putative phenoxyalkanoic acid herbicide-degrading dioxygenases, in soil.
In: Applied and Environmental Microbiology. Bd. 76 (2010) Heft 1 . - S. 119-128.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01727-09

Palmer, Katharina ; Drake, Harold L. ; Horn, Marcus A.:
Association of novel and highly diverse acid-tolerant denitrifiers with N2O fluxes of an acidic fen.
In: Applied and Environmental Microbiology. Bd. 76 (2010) Heft 4 . - S. 1125-1134.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.02256-09

Ullrich, Susanne ; Schüler, Dirk:
Cre-lox-Based Method for Generation of Large Deletions within the Genomic Magnetosome Island of Magnetospirillum gryphiswaldense.
In: Applied and Environmental Microbiology. Bd. 76 (2010) Heft 8 . - S. 2439-2444.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.02805-09

Degelmann, Daniela M. ; Borken, Werner ; Drake, Harold L. ; Kolb, Steffen:
Different atmospheric methane-oxidizing communities in European beech and Norway spruce soils.
In: Applied and Environmental Microbiology. Bd. 76 (2010) Heft 10 . - S. 3228-3235.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.02730-09

Depkat-Jakob, Peter ; Hilgarth, Maik ; Horn, Marcus A. ; Drake, Harold L.:
Effect of earthworm feeding guild on ingested dissimilatory nitrate reducers and denitrifiers in the alimentary canal of the earthworm.
In: Applied and Environmental Microbiology. Bd. 76 (2010) Heft 18 . - S. 6205-6214.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01373-10

Schmidt, Oliver ; Drake, Harold L. ; Horn, Marcus A.:
Hitherto unknown [Fe-Fe]-hydrogenase gene diversity in anaerobes and anoxic enrichments from a moderately acidic fen.
In: Applied and Environmental Microbiology. Bd. 76 (2010) Heft 6 . - S. 2027-2031.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.02895-09

Dörr, Nicole ; Glaser, Bruno ; Kolb, Steffen:
Methanotrophic communities in Brazilian ferralsols from naturally forested, afforested, and agricultural sites.
In: Applied and Environmental Microbiology. Bd. 76 (2010) Heft 4 . - S. 1307-1310.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.02282-09

Bosch, Julian ; Heister, Katja ; Hofmann, Thilo ; Meckenstock, Rainer U.:
Nanosized iron oxides strongly enhance microbial iron reduction.
In: Applied and Environmental Microbiology. Bd. 76 (2010) Heft 1 . - S. 184-189.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00417-09

2009

Schübbe, Sabrina ; Williams, Timothy J. ; Xie, Gary ; Kiss, Hajnalka E. ; Brettin, Thomas S. ; Martinez, Diego ; Ross, Christian A. ; Schüler, Dirk ; Cox, B. Lea ; Nealson, Kenneth H. ; Bazylinski, Dennis A.:
Complete Genome Sequence of the Chemolithoautotrophic Marine Magnetotactic Coccus Strain MC-1.
In: Applied and Environmental Microbiology. Bd. 75 (2009) Heft 14 . - S. 4835-4852.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.02874-08

Miot, Jennyfer ; Benzerara, Karim ; Obst, Martin ; Kappler, Andreas ; Hegler, Florian ; Schädler, Sebastian ; Bouchez, Camille ; Guyot, François ; Morin, Guillaume:
Extracellular Iron Biomineralization by Photoautotrophic Iron-Oxidizing Bacteria.
In: Applied and Environmental Microbiology. Bd. 75 (2009) Heft 17 . - S. 5586-5591.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00490-09

Palmer, Katharina ; Drake, Harold L. ; Horn, Marcus A.:
Genome-derived criteria for assigning environmental narG and nosZ sequences to operational taxonomic units of nitrate reducers.
In: Applied and Environmental Microbiology. Bd. 75 (2009) Heft 15 . - S. 5170-5174.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00254-09

Wüst, Pia K. ; Horn, Marcus A. ; Henderson, Gemma ; Janssen, Peter H. ; Rehm, Bernd H. A. ; Drake, Harold L.:
Gut-associated denitrification and in vivo emission of nitrous oxide by the earthworm families Megascolecidae and Lumbricidae in New Zealand.
In: Applied and Environmental Microbiology. Bd. 75 (2009) Heft 11 . - S. 3430-3436.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00304-09

Lang, Claus ; Pollithy, Anna ; Schüler, Dirk:
Identification of Promoters for Efficient Gene Expression in Magnetospirillum gryphiswaldense.
In: Applied and Environmental Microbiology. Bd. 75 (2009) Heft 12 . - S. 4206-4210.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.02906-08

Wüst, Pia K. ; Horn, Marcus A. ; Drake, Harold L.:
In situ hydrogen and nitrous oxide as indicators of concomitant fermentation and denitrification in the alimentary canal of the earthworm Lumbricus terrestris.
In: Applied and Environmental Microbiology. Bd. 75 (2009) Heft 7 . - S. 1852-1859.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.02745-08

Ohuchi, Shoji ; Schüler, Dirk:
In Vivo Display of a Multisubunit Enzyme Complex on Biogenic Magnetic Nanoparticles.
In: Applied and Environmental Microbiology. Bd. 75 (2009) Heft 24 . - S. 7734-7738.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01640-09

Jogler, Christian ; Lin, Wei ; Meyerdierks, Anke ; Kube, Michael ; Katzmann, Emanuel ; Flies, Christine ; Pan, Yongxin ; Amann, Rudolf ; Reinhardt, Richard ; Schüler, Dirk:
Toward Cloning of the Magnetotactic Metagenome : Identification of Magnetosome Island Gene Clusters in Uncultivated Magnetotactic Bacteria from Different Aquatic Sediments.
In: Applied and Environmental Microbiology. Bd. 75 (2009) Heft 12 . - S. 3972-3979.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.02701-08

Lackner, Gerald ; Möbius, Nadine ; Scherlach, Kirstin ; Partida-Martinez, Laila P. ; Winkler, Robert ; Schmitt, Imke ; Hertweck, Christian:
Global distribution and evolution of a toxinogenic Burkholderia-Rhizopus symbiosis.
In: Applied and Environmental Microbiology. Bd. 75 (2009) Heft 9 . - S. 2982-2986.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01765-08

2008

Hamberger, Alexandra ; Horn, Marcus A. ; Dumont, Marc G. ; Murrell, J. Collin ; Drake, Harold L.:
Anaerobic Consumers of Monosaccharides in a Moderately Acidic Fen.
In: Applied and Environmental Microbiology. Bd. 74 (2008) Heft 10 . - S. 3112-3120.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00193-08

Whitehead, Terence R. ; Price, Neil P. ; Drake, Harold L. ; Cotta, Michael A.:
Catabolic Pathway for the Production of Skatole and Indoleacetic Acid by the Acetogen Clostridium drakei, Clostridium scatologenes, and Swine Manure.
In: Applied and Environmental Microbiology. Bd. 74 (2008) Heft 6 . - S. 1950-1953.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.02458-07

Liu, Ya-Jun ; Li, Pan-Pan ; Zhao, Ke-Xin ; Wang, Bao-Jun ; Jiang, Cheng-Ying ; Drake, Harold L. ; Liu, Shuang-Jiang:
Corynebacterium glutamicum contains 3-deoxy-D-arabino-heptulosonate 7-phosphate synthases that display novel biochemical features.
In: Applied and Environmental Microbiology. Bd. 74 (2008) Heft 17 . - S. 5497-5503.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00262-08

Winderl, Christian ; Anneser, Bettina ; Griebler, Christian ; Meckenstock, Rainer U. ; Lüders, Tillmann:
Depth-resolved quantification of anaerobic toluene degraders and aquifer microbial community patterns in distinct redox zones of a tar oil contaminant plume.
In: Applied and Environmental Microbiology. Bd. 74 (2008) Heft 3 . - S. 792-801.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01951-07

Lang, Claus ; Schüler, Dirk:
Expression of Green Fluorescent Protein Fused to Magnetosome Proteins in Microaerophilic Magnetotactic Bacteria.
In: Applied and Environmental Microbiology. Bd. 74 (2008) Heft 15 . - S. 4944-4953.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00231-08

Blöthe, Marco ; Akob, Denise M. ; Kostka, Joel E. ; Göschel, Kathrin ; Drake, Harold L. ; Küsel, Kirsten:
pH gradient-induced heterogeneity of Fe(III)-reducing microorganisms in coal mining-associated lake sediments.
In: Applied and Environmental Microbiology. Bd. 74 (2008) Heft 4 . - S. 1019-1029.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.01194-07

2006

Lüders, Tillmann ; Kindler, Reimo ; Miltner, Anja ; Friedrich, Michael W. ; Kästner, Matthias:
Identification of bacterial micropredators distinctively active in a soil microbial food web.
In: Applied and Environmental Microbiology. Bd. 72 (2006) Heft 8 . - S. 5342-5348.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00400-06

Horn, Marcus A. ; Mertel, Ralf ; Kästner, Matthias ; Gehre, Matthias ; Drake, Harold L.:
In vivo emission of dinitrogen by earthworms via denitrifying bacteria in the gut.
In: Applied and Environmental Microbiology. Bd. 72 (2006) Heft 2 . - S. 1013-1018.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.72.2.1013-1018.2006

Horn, Marcus A. ; Drake, Harold L. ; Schramm, Andreas:
Nitrous oxide reductase genes (nosZ) of denitrifying microbial populations in soil and the earthworm gut are phylogenetically similar.
In: Applied and Environmental Microbiology. Bd. 72 (2006) Heft 2 . - S. 1019-1026.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.72.2.1019-1026.2006

Zientz, Evelyn ; Beyaert, Ivo ; Gross, Roy ; Feldhaar, Heike:
Relevance of the endosymbiosis of Blochmannia floridanus and carpenter ants at different stages of the life cycle of the host.
In: Applied and Environmental Microbiology. Bd. 72 (2006) . - S. 6027-6033.
ISSN 1098-5336
DOI: https://doi.org/10.1128/aem.00933-06

Schübbe, Sabrina ; Würdemann, Chris ; Peplies, Jörg ; Heyen, Udo ; Wawer, Cathrin ; Glöckner, Frank Oliver ; Schüler, Dirk:
Transcriptional Organization and Regulation of Magnetosome Operons in Magnetospirillum gryphiswaldense.
In: Applied and Environmental Microbiology. Bd. 72 (2006) Heft 9 . - S. 5757-5765.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.00201-06

2005

Ricke, Peter ; Kolb, Steffen ; Braker, Gesche:
Application of a newly developed ARB software-integrated tool for in silico terminal restriction fragment length polymorphism analysis reveals the dominance of a novel pmoA cluster in a forest soil.
In: Applied and Environmental Microbiology. Bd. 71 (2005) Heft 3 . - S. 1671-1673.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.71.3.1671-1673.2005

Flies, Christine B. ; Peplies, Jörg ; Schüler, Dirk:
Combined Approach for Characterization of Uncultivated Magnetotactic Bacteria from Various Aquatic Environments.
In: Applied and Environmental Microbiology. Bd. 71 (2005) Heft 5 . - S. 2723-2731.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.71.5.2723-2731.2005

2004

Grünberg, Karen ; Müller, Eva-Christina ; Otto, Albrecht ; Reszka, Regina ; Linder, Dietmar ; Kube, Michael ; Reinhardt, Richard ; Schüler, Dirk:
Biochemical and Proteomic Analysis of the Magnetosome Membrane in Magnetospirillum gryphiswaldense.
In: Applied and Environmental Microbiology. Bd. 70 (2004) Heft 2 . - S. 1040-1050.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.70.2.1040-1050.2004

Nielsen, Jeppe L. ; Schramm, Andreas ; Bernhard, Anne E. ; van den Engh, Gerrit J. ; Stahl, David A.:
Flow cytometry-assisted cloning of specific sequence motifs from complex 16S rRNA gene libraries.
In: Applied and Environmental Microbiology. Bd. 70 (2004) Heft 12 . - S. 7550-7554.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.70.12.7550-7554.2004

Schultheiss, Daniel ; Kube, Michael ; Schüler, Dirk:
Inactivation of the Flagellin Gene flaA in Magnetospirillum gryphiswaldense Results in Nonmagnetotactic Mutants Lacking Flagellar Filaments.
In: Applied and Environmental Microbiology. Bd. 70 (2004) Heft 6 . - S. 3624-3631.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.70.6.3624-3631.2004

Loy, Alexander ; Küsel, Kirsten ; Lehner, Angelika ; Drake, Harold L. ; Wagner, Michael:
Microarray and functional gene analyses of sulfate-reducing prokaryotes in low-sulfate, acidic fens reveal cooccurrence of recognized genera and novel lineages.
In: Applied and Environmental Microbiology. Bd. 70 (2004) Heft 12 . - S. 6998-7009.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.70.12.6998-7009.2004

Lüders, Tillmann ; Pommerenke, Bianca ; Friedrich, Michael W.:
Stable-isotope probing of microorganisms thriving at thermodynamic limits : syntrophic propionate oxidation in flooded soil.
In: Applied and Environmental Microbiology. Bd. 70 (2004) Heft 10 . - S. 5778-5786.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.70.10.5778-5786.2004

2003

Horn, Marcus A. ; Schramm, Andreas ; Drake, Harold L.:
The earthworm gut : an ideal habitat for ingested N2O-producing microorganisms.
In: Applied and Environmental Microbiology. Bd. 69 (2003) Heft 3 . - S. 1662-1669.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.69.3.1662-1669.2003

Lüders, Tillmann ; Friedrich, Michael W.:
Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts.
In: Applied and Environmental Microbiology. Bd. 69 (2003) Heft 1 . - S. 320-326.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.69.1.320-326.2003

Horn, Marcus A. ; Matthies, Carola ; Küsel, Kirsten ; Schramm, Andreas ; Drake, Harold L.:
Hydrogenotrophic methanogenesis by moderately acid-tolerant methanogens of a methane-emitting acidic peat.
In: Applied and Environmental Microbiology. Bd. 69 (2003) Heft 1 . - S. 74-83.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.69.1.74-83.2003

Ihssen, Julian ; Horn, Marcus A. ; Gößner, Anita S. ; Matthies, Carola ; Schramm, Andreas ; Drake, Harold L.:
N2O-producing microorganisms in the gut of the earthworm Aporrectodea caliginosa are indicative of ingested soil bacteria.
In: Applied and Environmental Microbiology. Bd. 69 (2003) Heft 3 . - S. 1655-1661.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.69.3.1655-1661.2003

Kolb, Steffen ; Knief, Claudia ; Stubner, Stephan ; Conrad, Ralf:
Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assays.
In: Applied and Environmental Microbiology. Bd. 69 (2003) Heft 5 . - S. 2423-2429.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.69.5.2423-2429.2003

2002

Lüders, Tillmann ; Friedrich, Michael W.:
Effects of amendment with ferrihydrite and gypsum on the structure and activity of methanogenic populations in rice field soil.
In: Applied and Environmental Microbiology. Bd. 68 (2002) Heft 5 . - S. 2484-2494.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.68.5.2484-2494.2002

Kistemann, Thomas ; Classen, Thomas ; Koch, C. ; Dangendorf, Friederike ; Fischeder, R. ; Gebel, J. ; Vacata, V. ; Exner, Mario:
Microbial load of drinking water reservoir tributaries during extreme rainfall and runoff.
In: Applied and Environmental Microbiology. Bd. 68 (2002) Heft 5 . - S. 2188-2197.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.68.5.2188-2197.2002

Karnholz, Arno ; Küsel, Kirsten ; Gößner, Anita S. ; Schramm, Andreas ; Drake, Harold L.:
Tolerance and metabolic response of acetogenic bacteria toward oxygen.
In: Applied and Environmental Microbiology. Bd. 68 (2002) Heft 2 . - S. 1005-1009.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.68.2.1005-1009.2002

2001

Friedrich, Michael W. ; Schmitt-Wagner, Dirk ; Lüders, Tillmann ; Brune, Andreas:
Axial differences in community structure of Crenarchaeota and Euryarchaeota in the highly compartmentalized gut of the soil-feeding termite Cubitermes orthognathus.
In: Applied and Environmental Microbiology. Bd. 67 (2001) Heft 10 . - S. 4880-4890.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.67.10.4880-4890.2001

Gieseke, Armin ; Purkhold, Ulrike ; Wagner, Michael ; Amann, Rudolf ; Schramm, Andreas:
Community tructure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm.
In: Applied and Environmental Microbiology. Bd. 67 (2001) Heft 3 . - S. 1351-1362.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.67.3.1351-1362.2001

Grünberg, Karen ; Wawer, Cathrin ; Tebo, Bradley M. ; Schüler, Dirk:
A large gene cluster encoding several magnetosome proteins is conserved in different species of magnetotactic bacteria.
In: Applied and Environmental Microbiology. Bd. 67 (2001) Heft 10 . - S. 4573-4582.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.67.10.4573-4582.2001

Küsel, Kirsten ; Karnholz, Arno ; Trinkwalter, Tanja ; Devereux, Richard ; Acker, Georg ; Drake, Harold L.:
Physiological ecology of Clostridium glycolicum RD-1, an aerotolerant acetogen isolated from sea grass roots.
In: Applied and Environmental Microbiology. Bd. 67 (2001) Heft 10 . - S. 4734-4741.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.67.10.4734-4741.2001

2000

Lüders, Tillmann ; Friedrich, Michael:
Archaeal population dynamics during sequential reduction processes in rice field soil.
In: Applied and Environmental Microbiology. Bd. 66 (2000) Heft 7 . - S. 2732-2742.
ISSN 1098-5336
DOI: https://doi.org/10.1128/AEM.66.7.2732-2742.2000

Oerther, Daniel B. ; Pernthaler, Jakob ; Schramm, Andreas ; Amann, Rudolf ; Raskin, Lutgarde:
Monitoring precursor 16S rRNA of Acinetobacter spp. in activated sludge wastewater treatment systems.
In: Applied and Environmental Microbiology. Bd. 66 (2000) Heft 5 . - S. 2154-2165.
ISSN 1098-5336

1999

Küsel, Kirsten ; Pinkart, Holly C. ; Drake, Harold L. ; Devereux, Richard:
Acetogenic and sulfate-reducing bacteria inhabiting the rhizoplane and deep cortex cells of the seagrass Halodule wrightii.
In: Applied and Environmental Microbiology. Bd. 65 (1999) Heft 11 . - S. 5117-5123.
ISSN 1098-5336

Matthies, Carola ; Grießhammer, Anja ; Schmittroth, Martina ; Drake, Harold L.:
Evidence for involvement of gut-associated denitrifying bacteria in emission of nitrous oxide (N2O) by earthworms obtained from garden and forest soils.
In: Applied and Environmental Microbiology. Bd. 65 (1999) Heft 8 . - S. 3599-3604.
ISSN 1098-5336

Küsel, Kirsten ; Dorsch, Tanja ; Acker, Georg ; Stackebrandt, Erko:
Microbial reduction of Fe(III) in acidic sediments : Isolation of Acidiphilium cryptum JF-5 capable of coupling the reduction of Fe(III) to the oxidation of glucose.
In: Applied and Environmental Microbiology. Bd. 65 (1999) Heft 8 . - S. 3633-3640.
ISSN 1098-5336

Schramm, Andreas ; de Beer, Dirk ; van den Heuvel, Johan C. ; Ottengraf, Simon ; Amann, Rudolf:
Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp. along a macroscale gradient in a nitrifying bioreactor : quantification by in situ hybridization and the use of microsensors.
In: Applied and Environmental Microbiology. Bd. 65 (1999) Heft 8 . - S. 3690-3696.
ISSN 1098-5336

Schramm, Andreas ; Santegoeds, Cecilia M. ; Nielsen, Helle K. ; Ploug, Helle ; Wagner, Michael ; Pribyl, Milan ; Wanner, Jiří ; Amann, Rudolf ; de Beer, Dirk:
On to the occurrence of anoxic microniches, denitrification, and sulfate reduction in aerated activated sludge.
In: Applied and Environmental Microbiology. Bd. 65 (1999) Heft 9 . - S. 4189-4196.
ISSN 1098-5336

Gößner, Anita S. ; Devereux, Richard ; Ohnemüller, Nadja ; Acker, Georg ; Stackebrandt, Erko ; Drake, Harold L.:
Thermicanus aegyptius gen. nov., sp. nov., isolated from oxic soil, a fermentative microaerophile that grows commensally with the thermophilic acetogen Moorella thermoacetica.
In: Applied and Environmental Microbiology. Bd. 65 (1999) Heft 11 . - S. 5124-5133.
ISSN 1098-5336

1998

Schramm, Andreas ; de Beer, Dirk ; Wagner, Michael ; Amann, Rudolf:
Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor.
In: Applied and Environmental Microbiology. Bd. 64 (1998) Heft 9 . - S. 3480-3485.
ISSN 1098-5336

1997

Karsten, Gudrun R. ; Drake, Harold L.:
Denitrifying bacteria in the earthworm gastrointestinal tract and the in vivo emission of nitrous oxide (N(inf2)O) by earthworms.
In: Applied and Environmental Microbiology. Bd. 63 (1997) Heft 5 . - S. 1878-1882.
ISSN 1098-5336

de Beer, Dirk ; Schramm, Andreas ; Santegoeds, Cecilia M. ; Kühl, Michael:
A nitrite microsensor for profiling environmental biofilms.
In: Applied and Environmental Microbiology. Bd. 63 (1997) Heft 3 . - S. 973-977.
ISSN 1098-5336

1996

Wagner, Christine ; Grießhammer, Anja ; Drake, Harold L.:
Acetogenic capacities and the anearobic turnover of carbon in a Kansas prairie soil.
In: Applied and Environmental Microbiology. Bd. 62 (1996) Heft 2 . - S. 494-500.
ISSN 1098-5336

Küsel, Kirsten ; Drake, Harold L.:
Anaerobic capacities of leaf litter.
In: Applied and Environmental Microbiology. Bd. 62 (1996) Heft 11 . - S. 4216-4219.
ISSN 1098-5336

Drake, Harold L. ; Aumen, Nicholas G. ; Kuhner, Carla H. ; Wagner, Christine ; Grießhammer, Anja ; Schmittroth, Martina:
Anaerobic microflora of Everglades sediments : effects of nutrients on population profiles and activities.
In: Applied and Environmental Microbiology. Bd. 62 (1996) Heft 2 . - S. 486-493.
ISSN 1098-5336

Schramm, Andreas ; Larsen, Lars H. ; Revsbech, Niels Peter ; Ramsing, Niels B. ; Amann, Rudolf ; Schleifer, Karl-Heinz:
Structure and function of a nitrifying biofilm as determined by in situ hybridization and the use of microelectrodes.
In: Applied and Environmental Microbiology. Bd. 62 (1996) Heft 12 . - S. 4641-4647.
ISSN 1098-5336

1995

Karsten, Gudrun R. ; Drake, Harold L.:
Comparative assessment of the aerobic and anaerobic microfloras of earthworm guts and forest soils.
In: Applied and Environmental Microbiology. Bd. 61 (1995) Heft 3 . - S. 1039-1044.
ISSN 1098-5336

Küsel, Kirsten ; Drake, Harold L.:
Effects of environmental parameters on the formation and turnover of acetate by forest soils.
In: Applied and Environmental Microbiology. Bd. 61 (1995) Heft 10 . - S. 3667-3675.
ISSN 1098-5336

1994

Küsel, Kirsten ; Drake, Harold L.:
Acetate synthesis in soil from a Bavarian beech forest.
In: Applied and Environmental Microbiology. Bd. 60 (1994) Heft 4 . - S. 1370-1373.
ISSN 1098-5336

1993

Daniel, Steven L. ; Drake, Harold L.:
Oxalate- and glyoxylate-dependent growth and acetogenesis by Clostridium thermoaceticum.
In: Applied and Environmental Microbiology. Bd. 59 (1993) Heft 9 . - S. 3062-3069.
ISSN 1098-5336