Zeitschrift: Environmental Microbiology

2024

Groß, Christina ; Hossen, Shakhawat ; Dittrich, Sebastian ; Knorr, Klaus-Holger ; Borken, Werner ; Noll, Matthias:
Biological nitrogen fixation, diversity and community structure of diazotrophs in two mosses in 25 temperate forests.
In: Environmental Microbiology. Bd. 26 (2024) Heft 1 . - e16555.
ISSN 1462-2920
DOI: https://doi.org/10.1111/1462-2920.16555

2023

Rohrbach, Stephan ; Gkoutselis, Gerasimos ; Hink, Linda ; Weig, Alfons ; Obst, Martin ; Diekmann, Astrid ; Ho, Adrian ; Rambold, Gerhard ; Horn, Marcus A.:
Microplastic polymer properties as deterministic factors driving terrestrial plastisphere microbiome assembly and succession in the field.
In: Environmental Microbiology. Bd. 25 (2023) Heft 12 . - S. 2681-2697.
ISSN 1462-2920
DOI: https://doi.org/10.1111/1462-2920.16234

Hink, Linda ; Holzinger, Anja ; Sandfeld, Tobias ; Weig, Alfons ; Schramm, Andreas ; Feldhaar, Heike ; Horn, Marcus A.:
Microplastic ingestion affects hydrogen production and microbiomes in the gut of the terrestrial isopod Porcellio scaber.
In: Environmental Microbiology. Bd. 25 (2023) Heft 12 . - S. 2776-2791.
ISSN 1462-2920
DOI: https://doi.org/10.1111/1462-2920.16386

2020

Kujala, Katharina ; Besold, Johannes ; Mikkonen, Anu ; Tiirola, Marja ; Planer-Friedrich, Britta:
Abundant and diverse arsenic‐metabolizing microorganisms in peatlands treating arsenic‐contaminated mining wastewaters.
In: Environmental Microbiology. Bd. 22 (2020) Heft 4 . - S. 1572-1587.
ISSN 1462-2920
DOI: https://doi.org/10.1111/1462-2920.14922

Dziuba, Marina ; Zwiener, Theresa ; Uebe, René ; Schüler, Dirk:
Single-step transfer of biosynthetic operons endows a non-magnetotactic Magnetospirillum strain from wetland with magnetosome biosynthesis.
In: Environmental Microbiology. Bd. 22 (2020) Heft 4 . - S. 1603-1618.
ISSN 1462-2920
DOI: https://doi.org/10.1111/1462-2920.14950

2019

Zeibich, Lydia ; Schmidt, Oliver ; Drake, Harold L.:
Dietary Polysaccharides : Fermentation Potentials of a Primitive Gut Ecosystem.
In: Environmental Microbiology. Bd. 21 (2019) Heft 4 . - S. 1436-1451.
ISSN 1462-2920
DOI: https://doi.org/10.1111/1462-2920.14556

2017

Pascual, Javier ; von Hoermann, Christian ; Rottler-Hoermann, Ann-Marie ; Nevo, Omer ; Geppert, Alicia ; Sikorski, Johannes ; Huber, Katharina J. ; Steiger, Sandra ; Ayasse, Manfred ; Overmann, Jörg:
Function of bacterial community dynamics in the formation of cadaveric semiochemicals during in situ carcass decomposition.
In: Environmental Microbiology. Bd. 19 (2017) Heft 8 . - S. 3310-3322.
ISSN 1462-2920
DOI: https://doi.org/10.1111/1462-2920.13828

2016

Hunger, Sindy ; Schmidt, Oliver G. ; Gößner, Anita S. ; Drake, Harold L.:
Formate-derived H2, a driver of hydrogenotrophic processes in the root-zone of a methane-emitting fen.
In: Environmental Microbiology. Bd. 18 (2016) Heft 9 . - S. 3106-3119.
ISSN 1462-2920
DOI: https://doi.org/10.1111/1462-2920.13301

Kolinko, Sebastian ; Richter, Michael ; Glöckner, Frank Oliver ; Brachmann, Andreas ; Schüler, Dirk:
Single-cell genomics of uncultivated deep-branching magnetotactic bacteria reveals a conserved set of magnetosome genes.
In: Environmental Microbiology. Bd. 18 (2016) Heft 1 . - S. 21-37.
ISSN 1462-2920
DOI: https://doi.org/10.1111/1462-2920.12907

2015

Schmidt, Oliver ; Horn, Marcus A. ; Kolb, Steffen ; Drake, Harold L.:
Temperature impacts differentially on the methanogenic food web of cellulose-supplemented peatland soil.
In: Environmental Microbiology. Bd. 17 (2015) Heft 3 . - S. 720-734.
ISSN 1462-2920
DOI: https://doi.org/10.1111/1462-2920.12507

Godin-Roulling, Amandine ; Schmidpeter, Philipp A. M. ; Schmid, Franz X. ; Feller, Georges:
Functional adaptations of the bacterial chaperone trigger factor to extreme environmental temperatures.
In: Environmental Microbiology. Bd. 17 (2015) Heft 7 . - S. 2407-2420.
ISSN 1462-2920
DOI: https://doi.org/10.1111/1462-2920.12707

2014

Dallinger, Anja ; Horn, Marcus A.:
Agricultural soil and drilosphere as reservoirs of new and unusual ssimilators of 2,4-Dichlorophenol Carbon.
In: Environmental Microbiology. Bd. 16 (2014) Heft 1 . - S. 84-100.
ISSN 1462-2920
DOI: https://doi.org/10.1111/1462-2920.12209

2013

Kolinko, Sebastian ; Wanner, Gerhard ; Katzmann, Emanuel ; Kiemer, Felizitas ; Fuchs, Bernhard M. ; Schüler, Dirk:
Clone libraries and single cell genome amplification reveal extended diversity of uncultivated magnetotactic bacteria from marine and freshwater environments.
In: Environmental Microbiology. Bd. 15 (2013) Heft 5 . - S. 1290-1301.
ISSN 1462-2920
DOI: https://doi.org/10.1111/1462-2920.12004

Lefèvre, Christopher T. ; Trubitsyn, Denis ; Abreu, Fernanda ; Kolinko, Sebastian ; Jogler, Christian ; de Almeida, Luiz Gonzaga Paula ; de Vasconcelos, Ana Tereza R. ; Kube, Michael ; Reinhardt, Richard ; Lins, Ulysses ; Pignol, David ; Schüler, Dirk ; Bazylinski, Dennis A. ; Ginet, Nicolas:
Comparative genomic analysis of magnetotactic bacteria from the Deltaproteobacteriaprovides new insights into magnetite and greigite magnetosome genes required for magnetotaxis.
In: Environmental Microbiology. Bd. 15 (2013) Heft 10 . - S. 2712-2735.
ISSN 1462-2920
DOI: https://doi.org/10.1111/1462-2920.12128

Küchler, Stefan ; Gibbs, George ; Burckhardt, Daniel ; Dettner, Konrad ; Hartung, Viktor:
Diversity of bacterial endosymbionts and bacteria–host co-evolution in Gondwanan relict moss bugs (Hemiptera: Coleorrhyncha: Peloridiidae).
In: Environmental Microbiology. Bd. 15 (2013) Heft 7 . - S. 2031-2042.
ISSN 1462-2920
DOI: https://doi.org/10.1111/1462-2920.12101

Lefèvre, Christopher T. ; Trubitsyn, Denis ; Abreu, Fernanda ; Kolinko, Sebastian ; de Almeida, Luiz Gonzaga Paula ; de Vasconcelos, Ana Tereza R. ; Lins, Ulysses ; Schüler, Dirk ; Ginet, Nicolas ; Pignol, David ; Bazylinski, Dennis A.:
Monophyletic origin of magnetotaxis and the first magnetosomes.
In: Environmental Microbiology. Bd. 15 (2013) Heft 8 . - S. 2267-2274.
ISSN 1462-2920
DOI: https://doi.org/10.1111/1462-2920.12097

2012

Behrens, Sebastian ; Kappler, Andreas ; Obst, Martin:
Linking environmental processes to the in situ functioning of microorganisms by high-resolution secondary ion mass spectrometry (NanoSIMS) and scanning transmission X-ray microscopy (STXM).
In: Environmental Microbiology. Bd. 14 (2012) Heft 11 . - S. 2851-2869.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2012.02724.x

Kolinko, Sebastian ; Jogler, Christian ; Katzmann, Emanuel ; Wanner, Gerhard ; Peplies, Jörg ; Schüler, Dirk:
Single-cell analysis reveals a novel uncultivated magnetotactic bacterium within the candidate division OP3.
In: Environmental Microbiology. Bd. 14 (2012) Heft 7 . - S. 1709-1721.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2011.02609.x

2011

Liu, Ya-Jun ; Liu, Shuang-Jiang ; Drake, Harold L. ; Horn, Marcus A.:
Alphaproteobacteria dominate active 2-Methyl-4-Chlorophenoxyacetic acid herbicide degraders in agricultural soil and drilosphere.
In: Environmental Microbiology. Bd. 13 (2011) Heft 4 . - S. 991-1009.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2010.02405.x

2010

Lüdecke, Claudia ; Reiche, Marco ; Eusterhues, Karin ; Nietzsche, Sandor ; Küsel, Kirsten:
Acid-tolerant microaerophilic Fe(II)-oxidizing bacteria promote Fe(III)-accumulation in a fen.
In: Environmental Microbiology. Bd. 12 (2010) Heft 10 . - S. 2814-2825.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2010.02251.x

Jogler, Christian ; Niebler, M. ; Lin, W. ; Kube, M. ; Wanner, Gerhard ; Kolinko, S. ; Stief, Peter ; Beck, A. J. ; de Beer, D. ; Petersen, N. ; Pan, Y. ; Amann, Rudolf ; Reinhardt, R. ; Schüler, Dirk:
Cultivation-independent characterization of "Candidatus Magnetobacterium bavaricum" via ultrastructural, geochemical, ecological and metagenomic methods.
In: Environmental Microbiology. Bd. 12 (2010) Heft 9 . - S. 2466-2478.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2010.02220.x

Herrmann, Steffi ; Kleinsteuber, Sabine ; Chatzinotas, Antonis ; Kuppardt, Steffen ; Lüders, Tillmann ; Richnow, Hans-Hermann ; Vogt, Carsten:
Functional characterization of an anaerobic benzene-degrading enrichment culture by DNA stable isotope probing.
In: Environmental Microbiology. Bd. 12 (2010) Heft 2 . - S. 401-411.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2009.02077.x

Schellenberger, Stefanie ; Kolb, Steffen ; Drake, Harold L.:
Metabolic responses of novel cellulolytic and saccharolytic agricultural soil Bacteria to oxygen.
In: Environmental Microbiology. Bd. 12 (2010) Heft 4 . - S. 845-861.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2009.02128.x

2009

Jogler, Christian ; Kube, Michael ; Schübbe, Sabrina ; Ullrich, Susanne ; Teeling, Hanno ; Bazylinski, Dennis A. ; Reinhardt, Richard ; Schüler, Dirk:
Comparative analysis of magnetosome gene clusters in magnetotactic bacteria provides further evidence for horizontal gene transfer.
In: Environmental Microbiology. Bd. 11 (2009) Heft 5 . - S. 1267-1277.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2009.01854.x

Glaubitz, Sabine ; Lüders, Tillmann ; Abraham, Wolf-Rainer ; Jost, Günter ; Jürgens, Klaus ; Labrenz, Matthias:
¹³C‐isotope analyses reveal that chemolithoautotrophic Gamma‐ and Epsilonproteobacteria feed a microbial food web in a pelagic redoxcline of the central Baltic Sea.
In: Environmental Microbiology. Bd. 11 (2009) Heft 2 . - S. 326-337.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2008.01770.x

Stoll, Sascha ; Feldhaar, Heike ; Gross, Roy:
Transcriptional profiling of the endosymbiont Blochmannia floridanus during different developmental stages of its holometabolous ant host.
In: Environmental Microbiology. Bd. 11 (2009) . - S. 877-888.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2008.01808.x

Wüst, Pia K. ; Horn, Marcus A. ; Drake, Harold L.:
Trophic links between fermenters and methanogens in a moderately acidic fen soil.
In: Environmental Microbiology. Bd. 11 (2009) Heft 6 . - S. 1395-1409.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2009.01867.x

Wenter, Roland ; Wanner, Gerhard ; Schüler, Dirk ; Overmann, Jörg:
Ultrastructure, tactic behaviour and potential for sulfate reduction of a novel multicellular magnetotactic prokaryote from North Sea sediments.
In: Environmental Microbiology. Bd. 11 (2009) Heft 6 . - S. 1493-1505.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2009.01877.x

2007

Winderl, Christian ; Schäfer, Sabine ; Lüders, Tillmann:
Detection of anaerobic toluene and hydrocarbon degraders in contaminated aquifers using benzylsuccinate synthase (bssA) genes as a functional marker.
In: Environmental Microbiology. Bd. 9 (2007) Heft 4 . - S. 1035-1046.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2006.01230.x

Schmalenberger, Achim ; Drake, Harold L. ; Küsel, Kirsten:
High unique diversity of sulfate-reducing prokaryotes characterized in a depth gradient in an acidic fen.
In: Environmental Microbiology. Bd. 9 (2007) Heft 5 . - S. 1317-1328.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2007.01251.x

Schwarz, Julia I. K. ; Lüders, Tillmann ; Eckert, Werner ; Conrad, Ralf:
Identification of acetate-utilizing Bacteria and Archaea in methanogenic profundal sediments of Lake Kinneret (Israel) by stable isotope probing of rRNA.
In: Environmental Microbiology. Bd. 9 (2007) Heft 1 . - S. 223-237.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2006.01133.x

Ping, Liyan ; Büchler, Rita ; Mithöfer, Axel ; Svatoš, Aleš ; Spiteller, Dieter ; Dettner, Konrad ; Gmeiner, Sophie ; Piel, Jörn ; Schlott, Bernhard ; Boland, Wilhelm:
A novel Dps-type protein from insect gut bacteria catalyses hydrolysis and synthesis of N-acyl amino acids.
In: Environmental Microbiology. Bd. 9 (2007) Heft 6 . - S. 1572-1583.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2007.01279.x

2006

Knief, Claudia ; Kolb, Steffen ; Bodelier, Paul L. E. ; Lipski, André ; Dunfield, Peter F.:
The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration.
In: Environmental Microbiology. Bd. 8 (2006) Heft 2 . - S. 321-333.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2005.00898.x

2005

Kolb, Steffen ; Knief, Claudia ; Dunfield, Peter F. ; Conrad, Ralf:
Abundance and activity of uncultured methanotrophic bacteria involved in the consumption of atmospheric methane in two forest soils.
In: Environmental Microbiology. Bd. 7 (2005) Heft 8 . - S. 1150-1161.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2005.00791.x

Lu, Yahai ; Lüders, Tillmann ; Friedrich, Michael W. ; Conrad, Ralf:
Detecting active methanogenic populations on rice roots using stable isotope probing.
In: Environmental Microbiology. Bd. 7 (2005) Heft 3 . - S. 326-336.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2005.00697.x

Kemnitz, Dana ; Kolb, Steffen ; Conrad, Ralf:
Phenotypic characterization of Rice Cluster III archaea without prior isolation by applying quantitative polymerase chain reaction to an enrichment culture.
In: Environmental Microbiology. Bd. 7 (2005) Heft 4 . - S. 553-565.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2004.00723.x

Chan, On Chim ; Claus, Peter ; Casper, Peter ; Ulrich, Andreas ; Lüders, Tillmann ; Conrad, Ralf:
Vertical distribution of structure and function of the methanogenic archaeal community in Lake Dagow sediment.
In: Environmental Microbiology. Bd. 7 (2005) Heft 8 . - S. 1139-1149.
ISSN 1462-2920
DOI: https://doi.org/10.1111/j.1462-2920.2005.00790.x

2004

Lüders, Tillmann ; Manefield, Mike ; Friedrich, Michael W.:
Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients.
In: Environmental Microbiology. Bd. 6 (2004) Heft 1 . - S. 73-78.
ISSN 1462-2920
DOI: https://doi.org/10.1046/j.1462-2920.2003.00536.x

Lüders, Tillmann ; Wagner, Bianca ; Claus, Peter ; Friedrich, Michael W.:
Stable isotope probing of rRNA and DNA reveals a dynamic methylotroph community and trophic interactions with fungi and protozoa in oxic rice field soil.
In: Environmental Microbiology. Bd. 6 (2004) Heft 1 . - S. 60-72.
ISSN 1462-2920
DOI: https://doi.org/10.1046/j.1462-2920.2003.00535.x

2003

Schramm, Andreas ; Davidson, Seana K. ; Dodsworth, Jeremy A. ; Drake, Harold L. ; Stahl, David A. ; Dubilier, Nicole:
Acidovorax-like symbionts in the nephridia of earthworms.
In: Environmental Microbiology. Bd. 5 (2003) Heft 9 . - S. 804-809.
ISSN 1462-2920
DOI: https://doi.org/10.1046/j.1462-2920.2003.00474.x

Altmann, Dörte ; Stief, Peter ; Amann, Rudolf ; de Beer, Dirk ; Schramm, Andreas:
In situ distribution and activity of nitrifying bacteria in freshwater sediment.
In: Environmental Microbiology. Bd. 5 (2003) Heft 9 . - S. 798-803.
ISSN 1462-2920
DOI: https://doi.org/10.1046/j.1469-2920.2003.00469.x

2002

Schramm, Andreas ; Fuchs, Bernhard M. ; Nielsen, Jeppe L. ; Tonolla, Mauro ; Stahl, David A.:
Fluorescence in situ hybridization of 16S rRNA gene clones (Clone-FISH) for probe validation and screening of clone libraries.
In: Environmental Microbiology. Bd. 4 (2002) Heft 11 . - S. 713-720.
ISSN 1462-2920
DOI: https://doi.org/10.1046/j.1462-2920.2002.00364.x

Küsel, Kirsten ; Roth, Ursula ; Drake, Harold L.:
Microbial reduction of Fe(III) in the presence of oxygen under low pH conditions.
In: Environmental Microbiology. Bd. 4 (2002) Heft 7 . - S. 414-421.
ISSN 1462-2920
DOI: https://doi.org/10.1046/j.1462-2920.2002.00314.x

2001

Lüders, Tillmann ; Chin, Kuk-Jeong ; Conrad, Ralf ; Friedrich, Michael:
Molecular analyses of methyl‐coenzyme M reductase α‐subunit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage.
In: Environmental Microbiology. Bd. 3 (2001) Heft 3 . - S. 194-204.
ISSN 1462-2920
DOI: https://doi.org/10.1046/j.1462-2920.2001.00179.x

2000

Schramm, Andreas ; de Beer, Dirk ; Gieseke, Armin ; Amann, Rudolf:
Microenvironments and distribution of nitrifying bacteria in a membrane-bound biofilm.
In: Environmental Microbiology. Bd. 2 (2000) Heft 6 . - S. 680-686.
ISSN 1462-2920
DOI: https://doi.org/10.1046/j.1462-2920.2000.00150.x

Bazylinski, Dennis A. ; Dean, Annette J. ; Schüler, Dirk ; Phillips, Elizabeth J. P. ; Lovley, Derek R.:
N₂-dependent growth and nitrogenase activity in the metal-metabolizing bacteria, Geobacter and Magnetospirillum species.
In: Environmental Microbiology. Bd. 2 (2000) Heft 3 . - S. 266-273.
ISSN 1462-2920
DOI: https://doi.org/10.1046/j.1462-2920.2000.00096.x

1999

Rabus, Ralf ; Wilkes, Heinz ; Schramm, Andreas ; Harms, Gerda ; Behrends, Astrid ; Amann, Rudolf ; Widdel, Friedrich:
Anaerobic utilization of alkylbenzenes and n-alkanes from crude oil in an enrichment culture of denitrifying bacteria affiliating with the β-subclass of Proteobacteria.
In: Environmental Microbiology. Bd. 1 (1999) Heft 2 . - S. 145-157.
ISSN 1462-2920
DOI: https://doi.org/10.1046/j.1462-2920.1999.00014.x