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BioDeepTime: A database of biodiversity time series for modern and fossil assemblages

Title data

Smith, Jansen ; Rillo, Marina C. ; Kocsis, Ádám T. ; Dornelas, Maria ; Fastovich, David ; Huang, Huai‐Hsuan M. ; Jonkers, Lukas ; Kiessling, Wolfgang ; Li, Qijian ; Liow, Lee Hsiang ; Margulis‐Ohnuma, Miranda ; Meyers, Stephen ; Na, Lin ; Penny, Amelia M. ; Pippenger, Kate ; Renaudie, Johan ; Saupe, Erin E. ; Steinbauer, Manuel ; Sugawara, Mauro ; Tomašovỳch, Adam ; Williams, John W. ; Yasuhara, Moriaki ; Finnegan, Seth ; Hull, Pincelli M.:
BioDeepTime: A database of biodiversity time series for modern and fossil assemblages.
In: Global Ecology and Biogeography. Vol. 32 (2023) Issue 10 . - pp. 1680-1689.
ISSN 1466-822X

Abstract in another language

Motivation: We have little understanding of how communities respond to varying magnitudes and rates of environmental perturbations across temporal scales. BioDeepTime harmonizes assemblage time series of presence and abundance data to help facilitate investigations of community dynamics across timescales and the response of communities to natural and anthropogenic stressors. BioDeepTime includes time series of terrestrial and aquatic assemblages of varying spatial and temporal grain and extent from the present-day to millions of years ago.
Main Types of Variables Included: BioDeepTime currently contains 7,437,847 taxon records from 10,062 assemblage time series, each with a minimum of 10 time steps. Age constraints, sampling method, environment and taxonomic scope are provided for each time series.
Spatial Location and Grain: The database includes 8752 unique sampling locations from freshwater, marine and terrestrial ecosystems. Spatial grain represented by individual samples varies from quadrats on the order of several cm2 to grid cells of ~100 km2.
Time Period and Grain: BioDeepTime in aggregate currently spans the last 451 million years, with the 10,062 modern and fossil assemblage time series ranging in extent from years to millions of years. The median extent of modern time series is 18.7 years and for fossil series is 54,872 years. Temporal grain, the time encompassed by individual samples, ranges from days to tens of thousands of years.
Major Taxa and Level of Measurement: The database contains information on 28,777 unique taxa with 4,769,789 records at the species level and another 271,218 records known to the genus level, including time series of benthic and planktonic foraminifera, coccolithophores, diatoms, ostracods, plants (pollen), radiolarians and other invertebrates and vertebrates. There are to date 7012 modern and 3050 fossil time series in BioDeepTime.
Software Format: SQLite, Comma-separated values.

Further data

Item Type: Article in a journal
Refereed: Yes
Institutions of the University: Faculties > Faculty of Biology, Chemistry and Earth Sciences
Faculties > Faculty of Cultural Studies > Department of Sport Science > Professor Sport Ecology
Profile Fields > Advanced Fields > Ecology and the Environmental Sciences
Research Institutions > Central research institutes > Bayreuth Center of Ecology and Environmental Research- BayCEER
Faculties > Faculty of Cultural Studies
Faculties > Faculty of Cultural Studies > Department of Sport Science
Profile Fields
Profile Fields > Advanced Fields
Research Institutions
Research Institutions > Central research institutes
Result of work at the UBT: Yes
DDC Subjects: 500 Science > 500 Natural sciences
500 Science > 560 Fossils, prehistoric life
500 Science > 570 Life sciences, biology
500 Science > 580 Plants (Botany)
Date Deposited: 27 Jul 2023 05:31
Last Modified: 16 Nov 2023 12:12