ERef Bayreuth

Institutions of the University of Bayreuth
Former Professors

University of Bayreuth (61035)
- Faculties (57374)
  - Faculty of Mathematics, Physics und Computer Science (9180)
    - Department of Computer Science (1356)
      - Former Professors (172)
        Chair Applied Computer Science I - Univ.-Prof. Dr. Bernhard Westfechtel (8)
        Lehrstuhl Künstliche Intelligenz in der Mikroskopie und Spektroskopie - Univ.-Prof. Dr. Thomas Wilhelm Bocklitz (163)

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Number of items at this level: 172.

2023

Contreras, Jhonatan ; Bocklitz, Thomas:
Agnostic eXplainable Artificial Intelligence (XAI) Method Based on Volterra Series.
In: Proceedings of the 12th International Conference on Pattern Recognition Applications and Methods. - Sétubal : SciTePress, 2023 . - pp. 597-606
DOI: https://doi.org/10.5220/0011889700003411

Vetter, Marcel ; Waldner, Maximilian J. ; Zundler, Sebastian ; Klett, Daniel ; Bocklitz, Thomas ; Neurath, Markus F. ; Adler, Werner ; Jesper, Daniel:
Artificial intelligence for the classification of focal liver lesions in ultrasound : a systematic review.
In: Ultraschall in der Medizin = European Journal of Ultrasound. Vol. 44 (2023) Issue 4 . - pp. 395-407.
DOI: https://doi.org/10.1055/a-2066-9372

Schröpfer, Johannes ; Buchmann, Thomas ; Westfechtel, Bernhard:
Projectional Editing of Software Product Lines Using Multi-variant Model Editors.
In: SN Computer Science. Vol. 4 (2023) . - 35.
DOI: https://doi.org/10.1007/s42979-022-01456-8

Królikowska, Milena ; Bocklitz, Thomas:
Transfer learning for Raman spectroscopy in biological applications : A case study for bacterial classification (Conference Presentation).
In: Advanced Chemical Microscopy for Life Science and Translational Medicine 2023. - Bellingham, Wash. : SPIE, 2023 . - PC1239213
DOI: https://doi.org/10.1117/12.2651063

Pistiki, Aikaterini ; Ryabchykov, Oleg ; Bocklitz, Thomas ; Rösch, Petra ; Popp, Jürgen:
Use of polymers as wavenumber calibration standards in deep-UVRR.
In: Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy. Vol. 287, Part 2 (2023) . - 122062.
DOI: https://doi.org/10.1016/j.saa.2022.122062

2022

Dümmel, Nikita:
MuLE : A Multi-Paradigm Language for Education.
Bayreuth , 2022 . - VIII, 356 p.
( Doctoral thesis, 2022 , Universität Bayreuth, Fakultät für Mathematik, Physik und Informatik)
DOI: https://doi.org/10.15495/EPub_UBT_00006408

Greiner, Sandra:
Reuse of Model Transformations for Propagating Variability Annotations in Annotative Software Product Lines.
Bayreuth , 2022 . - vii; 326 p.
( Doctoral thesis, 2022 , Universität Bayreuth, Fakultät für Mathematik, Physik und Informatik)
DOI: https://doi.org/10.15495/EPub_UBT_00006805

Tolstik, Elen ; Ali, Nairveen ; Schuler, Irina ; Dierks, Johann ; Möllmann, Dorothe ; Arias-Loza, Paula ; Baba, Hideo A. ; Nordbeck, Peter ; Bocklitz, Thomas ; Lorenz, Kristina:
Biospectroscopic imaging for diagnostics of cardiac involvements of Morbus Fabry.
In: Journal of Molecular and Cellular Cardiology. Vol. 173 (2022) Issue Suppl. . - p. 99.
DOI: https://doi.org/10.1016/j.yjmcc.2022.08.199

Tolstik, Elen ; Ali, Nairveen ; Guo, Shuxia ; Ebersbach, Paul ; Möllmann, Dorothe ; Arias-Loza, Paula ; Dierks, Johann ; Schuler, Irina ; Freier, Erik ; Debus, Jörg ; Baba, Hideo A. ; Nordbeck, Peter ; Bocklitz, Thomas ; Lorenz, Kristina:
CARS Imaging Advances Early Diagnosis of Cardiac Manifestation of Fabry Disease.
In: International Journal of Molecular Sciences. Vol. 23 (2022) Issue 10 . - 5345.
DOI: https://doi.org/10.3390/ijms23105345

Lorenz, Björn ; Guo, Shuxia ; Raab, Christoph ; Leisching, Patrick ; Bocklitz, Thomas ; Rösch, Petra ; Popp, Jürgen:
Comparison of conventional and shifted excitation Raman difference spectroscopy for bacterial identification.
In: Journal of Raman Spectroscopy. Vol. 53 (2022) Issue 7 . - pp. 1285-1292.
DOI: https://doi.org/10.1002/jrs.6360

Pistiki, Aikaterini ; Monecke, Stefan ; Shen, Haodong ; Ryabchykov, Oleg ; Bocklitz, Thomas ; Rösch, Petra ; Ehricht, Ralf ; Popp, Jürgen:
Comparison of Different Label-Free Raman Spectroscopy Approaches for the Discrimination of Clinical MRSA and MSSA Isolates.
In: Microbiology Spectrum. Vol. 10 (2022) Issue 5 . - e00763-22.
DOI: https://doi.org/10.1128/spectrum.00763-22

Luo, Ruihao ; Popp, Jürgen ; Bocklitz, Thomas:
Deep Learning for Raman Spectroscopy : A Review.
In: Analytica. Vol. 3 (2022) Issue 3 . - pp. 287-301.
DOI: https://doi.org/10.3390/analytica3030020

Nakar, Amir ; Pistiki, Aikaterini ; Ryabchykov, Oleg ; Bocklitz, Thomas ; Rösch, Petra ; Popp, Jürgen:
Detection of multi-resistant clinical strains of E. coli with Raman spectroscopy.
In: Analytical and Bioanalytical Chemistry. Vol. 414 (2022) Issue 4 . - pp. 1481-1492.
DOI: https://doi.org/10.1007/s00216-021-03800-y

Nakar, Amir ; Pistiki, Aikaterini ; Ryabchykov, Oleg ; Bocklitz, Thomas ; Rösch, Petra ; Popp, Jürgen:
Label‐free differentiation of clinical E. coli and Klebsiella isolates with Raman spectroscopy.
In: Journal of Biophotonics. Vol. 15 (2022) Issue 7 . - e202200005.
DOI: https://doi.org/10.1002/jbio.202200005

Liu, Xiao-Yang ; Guo, Shuxia ; Bocklitz, Thomas ; Rösch, Petra ; Popp, Jürgen ; Yu, Han-Qing:
Nondestructive 3D Imaging and Quantification of Hydrated Biofilm Matrix by Confocal Raman Microscopy Coupled with Non-Negative Matrix Factorization.
In: Water Research. Vol. 210 (2022) . - 117973.
DOI: https://doi.org/10.1016/j.watres.2021.117973

Pistiki, Aikaterini ; Hornung, Franziska ; Silge, Anja ; Ramoji, Anuradha ; Ryabchykov, Oleg ; Bocklitz, Thomas ; Weber, Karina ; Löffler, Bettina ; Popp, Jürgen ; Deinhardt‐Emmer, Stefanie:
Raman spectroscopic cellomics for the detection of SARS‐CoV‐2‐associated neutrophil activation after TNF‐α stimulation.
In: Clinical and Translational Medicine. Vol. 12 (2022) Issue 12 . - e1139.
DOI: https://doi.org/10.1002/ctm2.1139

Dahms, Marcel ; Eiserloh, Simone ; Rödel, Jürgen ; Makarewicz, Oliwia ; Bocklitz, Thomas ; Popp, Jürgen ; Neugebauer, Ute:
Raman Spectroscopic Differentiation of Streptococcus pneumoniae From Other Streptococci Using Laboratory Strains and Clinical Isolates.
In: Frontiers in Cellular and Infection Microbiology. Vol. 12 (2022) . - 930011.
DOI: https://doi.org/10.3389/fcimb.2022.930011

Cialla-May, Dana ; Krafft, Christoph ; Rösch, Petra ; Deckert-Gaudig, Tanja ; Frosch, Torsten ; Jahn, Izabella J. ; Pahlow, Susanne ; Stiebing, Clara ; Meyer-Zedler, Tobias ; Bocklitz, Thomas ; Schie, Iwan ; Deckert, Volker ; Popp, Jürgen:
Raman Spectroscopy and Imaging in Bioanalytics.
In: Analytical Chemistry. Vol. 94 (2022) Issue 1 . - pp. 86-119.
DOI: https://doi.org/10.1021/acs.analchem.1c03235

Storozhuk, Darina ; Ryabchykov, Oleg ; Popp, Jürgen ; Bocklitz, Thomas:
RAMANMETRIX : a delightful way to analyze Raman spectra.
arXiv , 2022
DOI: https://doi.org/10.48550/arXiv.2201.07586

Azam, Kazi Sultana Farhana ; Ryabchykov, Oleg ; Bocklitz, Thomas:
A Review on Data Fusion of Multidimensional Medical and Biomedical Data.
In: Molecules. Vol. 27 (2022) Issue 21 . - 7448.
DOI: https://doi.org/10.3390/molecules27217448

Escobar Díaz Guerrero, Rodrigo ; Carvalho, Lina ; Bocklitz, Thomas ; Popp, Jürgen ; Oliveira, José Luis:
Software tools and platforms in Digital Pathology : a review for clinicians and computer scientists.
In: Journal of Pathology Informatics. Vol. 13 (2022) . - 100103.
DOI: https://doi.org/10.1016/j.jpi.2022.100103

2021

Wichmann, Christina ; Bocklitz, Thomas ; Rösch, Petra ; Popp, Jügen:
Bacterial phenotype dependency from CO₂ measured by Raman spectroscopy.
In: Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy. Vol. 248 (2021) . - 119170.
DOI: https://doi.org/10.1016/j.saa.2020.119170

Pistiki, Aikaterini ; Ramoji, Anuradha ; Ryabchykov, Oleg ; Thomas-Rüddel, Daniel ; Press, Adrian T. ; Makarewicz, Oliwia ; Giamarellos-Bourboulis, Evangelos J. ; Bauer, Michael ; Bocklitz, Thomas ; Popp, Jürgen ; Neugebauer, Ute:
Biochemical Analysis of Leukocytes after In Vitro and In Vivo Activation with Bacterial and Fungal Pathogens Using Raman Spectroscopy.
In: International Journal of Molecular Sciences. Vol. 22 (2021) Issue 19 . - 10481.
DOI: https://doi.org/10.3390/ijms221910481

Guo, Shuxia ; Popp, Jürgen ; Bocklitz, Thomas:
Chemometric Analysis in Raman Spectroscopy from Experimental Design to Machine Learning-based Modelling.
In: Nature Protocols. Vol. 16 (2021) . - pp. 5426-5459.
DOI: https://doi.org/10.1038/s41596-021-00620-3

Houhou, Rola ; Rösch, Petra ; Popp, Jürgen ; Bocklitz, Thomas:
Comparison of functional and discrete data analysis regimes for Raman spectra.
In: Analytical and Bioanalytical Chemistry. Vol. 413 (2021) . - pp. 5633-5644.
DOI: https://doi.org/10.1007/s00216-021-03360-1

Pradhan, Pranita ; Meyer, Tobias ; Vieth, Michael ; Stallmach, Andreas ; Waldner, Maximilian ; Schmitt, Michael ; Popp, Jürgen ; Bocklitz, Thomas:
Computational tissue staining of non-linear multimodal imaging using supervised and unsupervised deep learning.
In: Biomedical Optics Express. Vol. 12 (2021) Issue 4 . - pp. 2280-2298.
DOI: https://doi.org/10.1364/BOE.415962

Pradhan, Pranita ; Köhler, Katharina ; Guo, Shuxia ; Rosin, Olga ; Popp, Jürgen ; Niendorf, Axel ; Bocklitz, Thomas:
Data Fusion of Histological and Immunohistochemical Image Data for Breast Cancer Diagnostics using Transfer Learning.
In: Proceedings of the 10th International Conference on Pattern Recognition Applications and Methods. Volume 1. - Sétubal : SciTePress, 2021 . - pp. 495-506
DOI: https://doi.org/10.5220/0010225504950506

Ali, Nairveen ; Bolenz, Christian ; Todenhöfer, Tilman ; Stenzel, Arnulf ; Deetmar, Peer ; Kriegmair, Martin ; Knoll, Thomas ; Porubsky, Stefan ; Hartmann, Arndt ; Popp, Jürgen ; Kriegmair, Maximilian C. ; Bocklitz, Thomas:
Deep learning-based classification of blue light cystoscopy imaging during transurethral resection of bladder tumors.
In: Scientific Reports. Vol. 11 (2021) Issue 1 . - 11629.
DOI: https://doi.org/10.1038/s41598-021-91081-x

Fellner, Lea ; Kraus, Marian ; Walter, Arne ; Duschek, Frank ; Bocklitz, Thomas ; Gabbarini, Valentina ; Rossi, Riccardo ; Puleio, Alessandro ; Malizia, Andrea ; Gaudio, Pasquale:
Determination of Composition of Mixed Biological Samples Using Laser-Induced Fluorescence and Combined Classification/Regression Models.
In: The European Physical Journal Plus. Vol. 136 (2021) . - 1122.
DOI: https://doi.org/10.1140/epjp/s13360-021-02019-1

Schleusener, Johannes ; Guo, Shuxia ; Darvin, Maxim E. ; Thiede, Gisela ; Chernavskaia, Olga ; Knorr, Florian ; Lademann, Jürgen ; Popp, Jürgen ; Bocklitz, Thomas:
Fiber-based SORS-SERDS system and chemometrics for the diagnostics and therapy monitoring of psoriasis inflammatory disease in vivo.
In: Biomedical Optics Express. Vol. 12 (2021) Issue 2 . - pp. 1123-1135.
DOI: https://doi.org/10.1364/BOE.413922

Guo, Shuxia ; Silge, Anja ; Bae, Hyeonsoo ; Tolstik, Tatiana ; Meyer, Tobias ; Matziolis, Georg ; Schmitt, Michael ; Popp, Jürgen ; Bocklitz, Thomas:
FLIM data analysis based on Laguerre polynomial decomposition and machine-learning.
In: Journal of Biomedical Optics. Vol. 26 (2021) Issue 2 . - 022909.
DOI: https://doi.org/10.1117/1.JBO.26.2.022909

Hniopek, Julian ; Müller, Carolin ; Bocklitz, Thomas ; Schmitt, Michael ; Dietzek, Benjamin ; Popp, Jürgen:
Kinetic-Model-Free Analysis of Transient Absorption Spectra Enabled by 2D Correlation Analysis.
In: The Journal of Physical Chemistry Letters. Vol. 12 (2021) Issue 17 . - pp. 4148-4153.
DOI: https://doi.org/10.1021/acs.jpclett.1c00835

Ramoji, Anuradha ; Thomas-Rüddel, Daniel ; Ryabchykov, Oleg ; Bauer, Michael ; Arend, Natalie ; Giamarellos-Bourboulis, Evangelos J. ; Eugen-Olsen, Jesper ; Kiehntopf, Michael ; Bocklitz, Thomas ; Popp, Jürgen ; Bloos, Frank ; Neugebauer, Ute:
Leukocyte Activation Profile Assessed by Raman Spectroscopy Helps Diagnosing Infection and Sepsis.
In: Critical Care Explorations. Vol. 3 (2021) Issue 5 . - e0394.
DOI: https://doi.org/10.1097/CCE.0000000000000394

Matanfack, Georgette Azemtsop ; Taubert, Martin ; Guo, Shuxia ; Bocklitz, Thomas ; Küsel, Kirsten ; Rösch, Petra ; Popp, Jürgen:
Monitoring Deuterium Uptake in Single Bacterial Cells via Two-Dimensional Raman Correlation Spectroscopy.
In: Analytical Chemistry. Vol. 93 (2021) Issue 21 . - pp. 7714-7723.
DOI: https://doi.org/10.1021/acs.analchem.1c01076

Kirchberger-Tolstik, Tatiana ; Ryabchykov, Oleg ; Bocklitz, Thomas ; Dirsch, Olaf ; Settmacher, Utz ; Popp, Jürgen ; Stallmach, Andreas:
Nondestructive molecular imaging by Raman spectroscopy vs. marker detection by MALDI IMS for an early diagnosis of HCC.
In: Analyst. Vol. 146 (2021) Issue 4 . - pp. 1239-1252.
DOI: https://doi.org/10.1039/D0AN01555E

Hniopek, Julian ; Bocklitz, Thomas ; Schmitt, Michael ; Popp, Jürgen:
Probing Protein Secondary Structure Influence on Active Centers with Hetero Two-Dimensional Correlation (Resonance) Raman Spectroscopy : A Demonstration on Cytochrome C.
In: Applied Spectroscopy. Vol. 75 (2021) Issue 8 . - pp. 1043-1052.
DOI: https://doi.org/10.1177/00037028211028916

Houhou, Rola ; Bocklitz, Thomas:
Trends in artificial intelligence, machine learning, and chemometrics applied to chemical data.
In: Analytical Science Advances. Vol. 2 (2021) Issue 3-4 . - pp. 128-141.
DOI: https://doi.org/10.1002/ansa.202000162

Huang, Jing ; Ali, Nairveen ; Quansah, Elsie ; Guo, Shuxia ; Noutsias, Michel ; Meyer-Zedler, Tobias ; Bocklitz, Thomas ; Popp, Jürgen ; Neugebauer, Ute ; Ramoji, Anuradha:
Vibrational Spectroscopic Investigation of Blood Plasma and Serum by Drop Coating Deposition for Clinical Application.
In: International Journal of Molecular Sciences. Vol. 22 (2021) Issue 4 . - 2191.
DOI: https://doi.org/10.3390/ijms22042191

Ali, Nairveen ; Jansen, Jeroen ; van den Doel, André ; Tinnevelt, Gerjen Herman ; Bocklitz, Thomas:
WE-ASCA: The Weighted-Effect ASCA for Analyzing Unbalanced Multifactorial Designs : A Raman Spectra-Based Example.
In: Molecules. Vol. 26 (2021) Issue 1 . - 66.
DOI: https://doi.org/10.3390/molecules26010066

2020

Westfechtel, Bernhard ; Greiner, Sandra:
Extending single- to multi-variant model transformations by trace-based propagation of variability annotations.
In: Software and Systems Modeling. Vol. 19 (2020) . - pp. 853-888.
DOI: https://doi.org/10.1007/s10270-020-00791-9

Locatelli, Marcello ; Mandrioli, Roberto ; Samanidou, Victoria ; Bocklitz, Thomas:
Analytica : A Journal of Analytical Chemistry and Chemical Analysis.
In: Analytica. Vol. 1 (2020) Issue 1 . - pp. 12-13.
DOI: https://doi.org/10.3390/analytica1010002

Ryabchykov, Oleg ; Guo, Shuxia ; Bocklitz, Thomas:
Analyzing Raman spectroscopic data.
In: Popp, Jürgen ; Mayerhöfer, Thomas (ed.): Micro-Raman Spectroscopy : Theory and Application. - Berlin ; Boston : De Gruyter, 2020 . - pp. 81-106
DOI: https://doi.org/10.1515/9783110515312-004

Guo, Shuxia ; Ryabchykov, Oleg ; Ali, Nairveen ; Houhou, Rola ; Bocklitz, Thomas:
Chemometrics in Raman Spectroscopy.
In: Comprehensive Chemometrics : Chemical and Biochemical Data Analysis. Second Edition. Volume 4. - San Diego : Elsevier, 2020 . - pp. 333-359
DOI: https://doi.org/10.1016/B978-0-12-409547-2.14600-1

Guo, Shuxia ; Beleites, Claudia ; Neugebauer, Ute ; Abalde-Cela, Sara ; Afseth, Nils Kristian ; Alsamad, Fatima ; Anand, Suresh ; Araujo-Andrade, Cuauhtemoc ; Aškrabić, Sonja ; Avci, Ertug ; Baia, Monica ; Baranska, Malgorzata ; Baria, Enrico ; Batista de Carvalho, Luis A. E. ; de Bettignies, Philippe ; Bonifacio, Alois ; Bonnier, Franck ; Brauchle, Eva Maria ; Byrne, Hugh J. ; Chourpa, Igor ; Cicchi, Riccardo ; Cuisinier, Frederic ; Culha, Mustafa ; Dahms, Marcel ; David, Catalina ; Duponchel, Ludovic ; Duraipandian, Shiyamala ; El-Mashtoly, Samir F. ; Ellis, David I. ; Eppe, Gauthier ; Falgayrac, Guillaume ; Gamulin, Ozren ; Gardner, Benjamin ; Gardner, Peter ; Gerwert, Klaus ; Giamarellos-Bourboulis, Evangelos J. ; Gizurarson, Sveinbjorn ; Gnyba, Marcin ; Goodacre, Royston ; Grysan, Patrick ; Guntinas-Lichius, Orlando ; Helgadottir, Helga ; Grošev, Vlasta Mohaček ; Kendall, Catherine ; Kiselev, Roman ; Kölbach, Micha ; Krafft, Christoph ; Krishnamoorthy, Sivashankar ; Kubryck, Patrick ; Lendl, Bernhard ; Loza-Alvarez, Pablo ; Lyng, Fiona M. ; Machill, Susanne ; Malherbe, Cedric ; Marro, Monica ; Marques, Maria Paula M. ; Matuszyk, Ewelina ; Morasso, Carlo Francesco ; Moreau, Myriam ; Muhamadali, Howbeer ; Mussi, Valentina ; Notingher, Ioan ; Pacia, Marta Z. ; Pavone, Francesco S. ; Penel, Guillaume ; Petersen, Dennis ; Piot, Olivier ; Rau, Julietta V. ; Richter, Marc ; Rybarczyk, Maria Krystyna ; Salehi, Hamideh ; Schenke-Layland, Katja ; Schlücker, Sebastian ; Schosserer, Markus ; Schütze, Karin ; Sergo, Valter ; Sinjab, Faris ; Smulko, Janusz ; Sockalingum, Ganesh D. ; Stiebing, Clara ; Stone, Nick ; Untereiner, Valérie ; Vanna, Renzo ; Wieland, Karin ; Popp, Jürgen ; Bocklitz, Thomas:
Comparability of Raman Spectroscopic Configurations : A Large Scale Cross-Laboratory Study.
In: Analytical Chemistry. Vol. 92 (2020) Issue 24 . - pp. 15745-15756.
DOI: https://doi.org/10.1021/acs.analchem.0c02696

Pradhan, Pranita ; Guo, Shuxia ; Ryabchykov, Oleg ; Popp, Jürgen ; Bocklitz, Thomas:
Deep learning a boon for Biophotonics?
In: Journal of Biophotonics. Vol. 13 (2020) Issue 6 . - e201960186.
DOI: https://doi.org/10.1002/jbio.201960186

Houhou, Rola ; Barman, Parijat ; Schmitt, Michael ; Meyer, Tobias ; Popp, Jürgen ; Bocklitz, Thomas:
Deep learning as phase retrieval tool for CARS spectra.
In: Optics Express. Vol. 28 (2020) Issue 14 . - pp. 21002-21024.
DOI: https://doi.org/10.1364/OE.390413

Guo, Shuxia ; Mayerhöfer, Thomas ; Pahlow, Susanne ; Hübner, Uwe ; Popp, Jürgen ; Bocklitz, Thomas:
Deep learning for "artefact" removal in infrared spectroscopy.
In: Analyst. Vol. 145 (2020) Issue 15 . - pp. 5213-5220.
DOI: https://doi.org/10.1039/D0AN00917B

Lorenz, Björn ; Ali, Nairveen ; Bocklitz, Thomas ; Rösch, Petra ; Popp, Jürgen:
Discrimination between pathogenic and non-pathogenic E. coli strains by means of Raman microspectroscopy.
In: Analytical and Bioanalytical Chemistry. Vol. 412 (2020) . - pp. 8241-8247.
DOI: https://doi.org/10.1007/s00216-020-02957-2

Wittenberg, Thomas ; Becker, Wolfgang ; Bocklitz, Thomas ; Braun, Lukas ; Hackner, Ralf ; Lemke, Niels ; Miernik, Arkadiusz ; Pohlmann, Philippe-Fabian ; Suarez-Ibarrola, Rodrigo ; Krafft, Christoph:
First results of computer-enhanced optical diagnosis of bladder cancer.
In: Current Directions in Biomedical Engineering. Vol. 6 (2020) Issue 3 . - pp. 246-249.
DOI: https://doi.org/10.1515/cdbme-2020-3062

Sittig, Maria ; Schmidt, Benny ; Görls, Helmar ; Bocklitz, Thomas ; Wächtler, Maria ; Zechel, Stefan ; Hager, Martin D. ; Dietzek, Benjamin:
Fluorescence upconversion by triplet–triplet annihilation in all-organic poly(methacrylate)-terpolymers.
In: Physical Chemistry Chemical Physics. Vol. 22 (2020) Issue 7 . - pp. 4072-4079.
DOI: https://doi.org/10.1039/D0CP00232A

Azemtsop Matanfack, Georgette ; Taubert, Martin ; Guo, Shuxia ; Houhou, Rola ; Bocklitz, Thomas ; Küsel, Kirsten ; Rösch, Petra ; Popp, Jürgen:
Influence of Carbon Sources on Quantification of Deuterium Incorporation in Heterotrophic Bacteria : A Raman-Stable Isotope Labeling Approach.
In: Analytical Chemistry. Vol. 92 (2020) Issue 16 . - pp. 11429-11437.
DOI: https://doi.org/10.1021/acs.analchem.0c02443

Bec, Julien ; Shaik, Tanveer Ahmed ; Krafft, Christoph ; Bocklitz, Thomas ; Alfonso-Garcia, Alba ; Margulies, Kenneth B. ; Popp, Jürgen ; Marcu, Laura:
Investigating Origins of FLIm Contrast in Atherosclerotic Lesions Using Combined FLIm-Raman Spectroscopy.
In: Frontiers in Cardiovascular Medicine. Vol. 7 (2020) . - 122.
DOI: https://doi.org/10.3389/fcvm.2020.00122

Guo, Shuxia ; Rösch, Petra ; Popp, Jürgen ; Bocklitz, Thomas:
Modified PCA and PLS : Towards a Better Classification in Raman Spectroscopy-based Biological Applications.
In: Journal of Chemometrics. Vol. 34 (2020) Issue 4 . - e3202.
DOI: https://doi.org/10.1002/cem.3202

Steinbeck, Christoph ; Koepler, Oliver ; Bach, Felix ; Herres-Pawlis, Sonja ; Jung, Nicole ; Liermann, Johannes C. ; Neumann, Steffen ; Razum, Matthias ; Baldauf, Carsten ; Biedermann, Frank ; Bocklitz, Thomas ; Boehm, Franziska ; Broda, Frank ; Czodrowski, Paul ; Engel, Thomas ; Hicks, Martin G. ; Kast, Stefan M. ; Kettner, Carsten ; Koch, Wolfram ; Lanza, Giacomo ; Link, Andreas ; Mata, Ricardo A. ; Nagel, Wolfgang E. ; Porzel, Andrea ; Schlörer, Nils ; Schulze, Tobias ; Weinig, Hans-Georg ; Wenzel, Wolfgang ; Wessjohann, Ludger A. ; Wulle, Stefan:
NFDI4Chem : Towards a National Research Data Infrastructure for Chemistry in Germany.
In: Research Ideas and Outcomes. Vol. 6 (2020) . - e55852.
DOI: https://doi.org/10.3897/rio.6.e55852

Bocklitz, Thomas ; Silge, Anja ; Bae, Hyeonsoo ; Rodewald, Marko ; Legesse, Fisseha Bekele ; Meyer, Tobias ; Popp, Jürgen:
Non-invasive Imaging Techniques : From Histology to In Vivo Imaging.
In: Schober, Otmar ; Kiessling, Fabian ; Debus, Jürgen (ed.): Molecular Imaging in Oncology. - Cham : Springer, 2020 . - pp. 795-812 . - (Recent Results in Cancer Research ; 216 )
DOI: https://doi.org/10.1007/978-3-030-42618-7_25

Hniopek, Julian ; Schmitt, Michael ; Popp, Jügen ; Bocklitz, Thomas:
PC 2D-COS : A Principal Component Base Approach to Two-Dimensional Correlation Spectroscopy.
In: Applied Spectroscopy. Vol. 74 (2020) Issue 4 . - pp. 460-472.
DOI: https://doi.org/10.1177/0003702819891194

Ali, Nairveen ; Kirchhoff, Johanna ; Onoja, Patrick Igoche ; Tannert, Astrid ; Neugebauer, Ute ; Popp, Jürgen ; Bocklitz, Thomas:
Predictive Modeling of Antibiotic Susceptibility in E. Coli Strains Using the U-Net Network and One-Class Classification.
In: IEEE Access. Vol. 8 (2020) . - pp. 167711-167720.
DOI: https://doi.org/10.1109/ACCESS.2020.3022829

Krafft, Christoph ; Guo, Shuxia ; Bocklitz, Thomas ; Bronsert, Peter ; Miernik, Arkadiusz ; Popp, Jürgen:
Raman Spectroscopy to Characterize Bladder Tissue for Multidimensional Diagnostics of Cancer in Urology.
In: Current Directions in Biomedical Engineering. Vol. 6 (2020) Issue 3 . - pp. 250-253.
DOI: https://doi.org/10.1515/cdbme-2020-3063

Pahlow, Susanne ; Orasch, Thomas ; Žukovskaja, Olga ; Bocklitz, Thomas ; Haas, Hubertus ; Weber, Karina:
Rapid detection of the aspergillosis biomarker triacetylfusarinine C using interference-enhanced Raman spectroscopy.
In: Analytical and Bioanalytical Chemistry. Vol. 412 (2020) . - pp. 6351-6360.
DOI: https://doi.org/10.1007/s00216-020-02571-2

Liu, Xiao-Yang ; Guo, Shuxia ; Ramoji, Anuradha ; Bocklitz, Thomas ; Rösch, Petra ; Popp, Jürgen ; Yu, Han-Qing:
Spatiotemporal Organization of Biofilm Matrix Revealed by Confocal Raman Mapping Integrated with Non-negative Matrix Factorization Analysis.
In: Analytical Chemistry. Vol. 92 (2020) Issue 1 . - pp. 707-715.
DOI: https://doi.org/10.1021/acs.analchem.9b02593

Kirchberger-Tolstik, Tatiana ; Pradhan, Pranita ; Vieth, Michael ; Grunert, Philip ; Popp, Jürgen ; Bocklitz, Thomas ; Stallmach, Andreas:
Towards an interpretable classifier for characterization of endoscopic Mayo scores in ulcerative colitis using Raman Spectroscopy.
In: Analytical Chemistry. Vol. 92 (2020) Issue 20 . - pp. 13776-13784.
DOI: https://doi.org/10.1021/acs.analchem.0c02163

Žukovskaja, Olga ; Ryabchykov, Oleg ; Straßburger, Maria ; Heinekamp, Thorsten ; Brakhage, Axel A. ; Hennings, Christopher J. ; Hübner, Christian A. ; Wegmann, Michael ; Cialla-May, Dana ; Bocklitz, Thomas ; Weber, Karina ; Popp, Jürgen:
Towards Raman spectroscopy of urine as screening tool.
In: Journal of Biophotonics. Vol. 13 (2020) Issue 1 . - e201900143.
DOI: https://doi.org/10.1002/jbio.201900143

Huang, Jing ; Ramoji, Anuradha ; Guo, Shuxia ; Bocklitz, Thomas ; Boivin-Jahns, Valérie ; Möller, Jan ; Kiehntopf, Michael ; Noutsias, Michel ; Popp, Jürgen ; Neugebauer, Ute:
Vibrational spectroscopy as a powerful tool for follow-up immunoadsorption therapy treatment of dilated cardiomyopathy : a case report.
In: Analyst. Vol. 145 (2020) Issue 2 . - pp. 486-496.
DOI: https://doi.org/10.1039/C9AN01696A

2019

Ali, Nairveen ; Quansah, Elsie ; Köhler, Katarina ; Meyer, Tobias ; Schmitt, Michael ; Popp, Jürgen ; Niendorf, Axel ; Bocklitz, Thomas:
Automatic Label-free Detection of Breast Cancer Using Nonlinear Multimodal Imaging and the Convolutional Neural Network ResNet50.
In: Translational Biophotonics. Vol. 1 (2019) Issue 1-2 . - e201900003.
DOI: https://doi.org/10.1002/tbio.201900003

Bocklitz, Thomas:
Review of: Brereton, Richard G.: Chemometrics : data driven extraction for science. 2nd ed.
In: Analytical and Bioanalytical Chemistry. Vol. 411 (2019) . - pp. 2995-2996.
DOI: https://doi.org/10.1007/s00216-019-01786-2

Schleusener, J. ; Carrer, V. ; Patzelt, A. ; Guo, S. ; Bocklitz, Thomas ; Coderch, L. ; Lademann, J. ; Darvin, M. E.:
Confocal Raman imaging of skin sections containing hair follicles using classical least squares regression and multivariate curve resolution : alternating least squares.
In: Quantum Electronics. Vol. 49 (2019) Issue 1 . - pp. 6-12.
DOI: https://doi.org/10.1070/QEL16901

Geitner, Robert ; Fritzsch, Robby ; Popp, Jürgen ; Bocklitz, Thomas:
corr2D : Implementation of Two-Dimensional Correlation Analysis in R.
In: Journal of Statistical Software. Vol. 90 (2019) Issue 3 . - pp. 1-33.
DOI: https://doi.org/10.18637/jss.v090.i03

Rodner, Erik ; Bocklitz, Thomas ; von Eggeling, Ferdinand ; Ernst, Günther ; Chernavskaia, Olga ; Popp, Jürgen ; Denzler, Joachim ; Guntinas-Lichius, Orlando:
Fully convolutional networks in multimodal nonlinear microscopy images for automated detection of head and neck carcinoma : pilot study.
In: Head & Neck. Vol. 41 (2019) Issue 1 . - pp. 116-121.
DOI: https://doi.org/10.1002/hed.25489

Moawad, Amira A. ; Silge, Anja ; Bocklitz, Thomas ; Fischer, Katja ; Rösch, Petra ; Roesler, Uwe ; Elschner, Mandy C. ; Popp, Jürgen ; Neubauer, Heinrich:
A Machine Learning-Based Raman Spectroscopic Assay for the Identification of Burkholderia mallei and Related Species.
In: Molecules. Vol. 24 (2019) Issue 24 . - 4516.
DOI: https://doi.org/10.3390/molecules24244516

Yarbakht, Melina ; Pradhan, Pranita ; Köse-Vogel, Nilay ; Bae, Hyeonsoo ; Stengel, Sven ; Meyer, Tobias ; Schmitt, Michael ; Stallmach, Andreas ; Popp, Jürgen ; Bocklitz, Thomas ; Bruns, Tony:
Nonlinear Multimodal Imaging Characteristics of Early Septic Liver Injury in a Mouse Model of Peritonitis.
In: Analytical Chemistry. Vol. 91 (2019) Issue 17 . - pp. 11116-11121.
DOI: https://doi.org/10.1021/acs.analchem.9b01746

Ramoji, Anuradha ; Ryabchykov, Oleg ; Galler, Kerstin ; Tannert, Astrid ; Markwart, Robby ; Requardt, Robert P. ; Rubio, Ignacio ; Bauer, Michael ; Bocklitz, Thomas ; Popp, Jürgen ; Neugebauer, Ute:
Raman Spectroscopy Follows Time-Dependent Changes in T Lymphocytes Isolated from Spleen of Endotoxemic Mice.
In: ImmunoHorizons. Vol. 3 (2019) Issue 2 . - pp. 45-60.
DOI: https://doi.org/10.4049/immunohorizons.1800059

Pradhan, Pranita ; Meyer, Tobias ; Vieth, Michael ; Stallmach, Andreas ; Waldner, Maximilian ; Schmitt, Michael ; Popp, Jürgen ; Bocklitz, Thomas:
Semantic segmentation of Non-Linear Multimodal images for disease grading of Inflammatory Bowel Disease : A SegNet-based application.
In: Proceedings of the 8th International Conference on Pattern Recognition Applications and Methods. Volume 1. - Setúbal : SciTePress, 2019 . - pp. 396-405
DOI: https://doi.org/10.5220/0007314003960405

Wichmann, Christina ; Chhallani, Mehul ; Bocklitz, Thomas ; Rösch, Petra ; Popp, Jürgen:
Simulation of Transportation and Storage and Their Influence on Raman Spectra of Bacteria.
In: Analytical Chemistry. Vol. 91 (2019) Issue 21 . - pp. 13688-13694.
DOI: https://doi.org/10.1021/acs.analchem.9b02932

Bocklitz, Thomas:
Understanding of Non-linear Parametric Regression and Classification Models : a Taylor Series Based Approach.
In: Proceedings of the 8th International Conference on Pattern Recognition Applications and Methods. Volume 1. - Setúbal : SciTePress, 2019 . - pp. 874-880
DOI: https://doi.org/10.5220/0007682008740880

2018

Silge, Anja ; Heinke, Ralf ; Bocklitz, Thomas ; Wiegand, Cornelia ; Hipler, Uta-Christina ; Rösch, Petra ; Popp, Jürgen:
The application of UV Resonance Raman spectroscopy for the differentiation of clinically relevant Candida species.
In: Analytical and Bioanalytical Chemistry. Vol. 410 (2018) . - pp. 5839-5847.
DOI: https://doi.org/10.1007/s00216-018-1196-2

Bocklitz, Thomas ; Meyer, T. ; Schmitt, M. ; Rimke, I. ; Hoffmann, F. ; von Eggeling, F. ; Ernst, G. ; Guntinas-Lichius, O. ; Popp, J.:
Comparison of hyperspectral coherent Raman scattering microscopies for biomedical applications.
In: APL Photonics. Vol. 3 (2018) Issue 9 . - 092404.
DOI: https://doi.org/10.1063/1.5030159

Geitner, Robert ; Legesse, Fisseha-Bekele ; Kuhl, Natascha ; Bocklitz, Thomas ; Zechel, Stefan ; Vitz, Jürgen ; Hager, Martin ; Schubert, Ulrich S. ; Dietzek, Benjamin ; Schmitt, Michael ; Popp, Jürgen:
Do you get what you see? Understanding molecular self-healing.
In: Chemistry : a European Journal. Vol. 24 (2018) Issue 10 . - pp. 2493-2502.
DOI: https://doi.org/10.1002/chem.201705836

Guo, Shuxia ; Kohler, Achim ; Zimmermann, Boris ; Heinke, Ralf ; Stöckel, Stephan ; Rösch, Petra ; Popp, Jürgen ; Bocklitz, Thomas:
Extended Multiplicative Signal Correction Based Model Transfer for Raman Spectroscopy in Biological Applications.
In: Analytical Chemistry. Vol. 90 (2018) Issue 16 . - pp. 9787-9795.
DOI: https://doi.org/10.1021/acs.analchem.8b01536

Ryabchykov, Oleg ; Popp, Jürgen ; Bocklitz, Thomas:
Fusion of MALDI Spectrometric Imaging and Raman Spectroscopic Data for the Analysis of Biological Samples.
In: Frontiers in Chemistry. Vol. 6 (2018) . - 257.
DOI: https://doi.org/10.3389/fchem.2018.00257

Guo, Shuxia ; Heinke, Ralf ; Stöckel, Stephan ; Rösch, Petra ; Popp, Jürgen ; Bocklitz, Thomas:
Model transfer for Raman-spectroscopy-based bacterial classification.
In: Journal of Raman Spectroscopy. Vol. 49 (2018) Issue 4 . - pp. 627-637.
DOI: https://doi.org/10.1002/jrs.5343

Guo, Shuxia ; Pfeifenbring, Susanne ; Meyer, Tobias ; Ernst, Günther ; von Eggeling, Ferdinand ; Maio, Vincenza ; Massi, Daniela ; Cicchi, Riccardo ; Pavone, Francesco S. ; Popp, Jürgen ; Bocklitz, Thomas:
Multimodal Image Analysis in Tissue Diagnostics for Skin Melanoma.
In: Journal of Chemometrics. Vol. 32 (2018) Issue 1 . - e2963.
DOI: https://doi.org/10.1002/cem.2963

Ryabchykov, Oleg ; Bräutigam, Katharina ; Galler, Kerstin ; Neugebauer, Ute ; Mosig, Alexander ; Bocklitz, Thomas ; Popp, Jürgen:
Raman spectroscopic investigation of the human liver cell line HepaRG.
In: Journal of Raman Spectroscopy. Vol. 49 (2018) Issue 6 . - pp. 935-942.
DOI: https://doi.org/10.1002/jrs.5392

Silge, Anja ; Bocklitz, Thomas ; Becker, Bjoern ; Matheis, Walter ; Popp, Jürgen ; Bekeredjian-Ding, Isabelle:
Raman spectroscopy-based identification of toxoid vaccine products.
In: npj Vaccines. Vol. 3 (2018) Issue 1 . - 50.
DOI: https://doi.org/10.1038/s41541-018-0088-y

Ali, Nairveen ; Girnus, Sophie ; Rösch, Petra ; Popp, Jürgen ; Bocklitz, Thomas:
Sample-size planning for multivariate data : a Raman-spectroscopy-based example.
In: Analytical Chemistry. Vol. 90 (2018) Issue 21 . - pp. 12485-12492.
DOI: https://doi.org/10.1021/acs.analchem.8b02167

Guo, Shuxia ; Chernavskaia, Olga ; Popp, Jürgen ; Bocklitz, Thomas:
Spectral reconstruction for shifted-excitation Raman difference spectroscopy (SERDS).
In: Talanta. Vol. 186 (2018) . - pp. 372-380.
DOI: https://doi.org/10.1016/j.talanta.2018.04.050

Dugandžić, Vera ; Drikermann, Denis ; Ryabchykov, Oleg ; Undisz, Andreas ; Vilotijević, Ivan ; Lorkowski, Stefan ; Bocklitz, Thomas ; Matthäus, Christian ; Weber, Karina ; Cialla-May, Dana ; Popp, Jürgen:
Surface enhanced Raman spectroscopy-detection of the uptake of mannose-modified nanoparticles by macrophages in vitro : A model for detection of vulnerable atherosclerotic plaques.
In: Journal of Biophotonics. Vol. 11 (2018) Issue 12 . - e201800013.
DOI: https://doi.org/10.1002/jbio.201800013

Žukovskaja, Olga ; Kloß, Sandra ; Blango, Matthew G. ; Ryabchykov, Oleg ; Kniemeyer, Olaf ; Brakhage, Axel A. ; Bocklitz, Thomas ; Cialla-May, Dana ; Weber, Karina ; Popp, Jürgen:
UV-Raman spectroscopic identification of fungal spores important for respiratory diseases.
In: Analytical Chemistry. Vol. 90 (2018) Issue 15 . - pp. 8912-8918.
DOI: https://doi.org/10.1021/acs.analchem.8b01038

2017

Guo, Shuxia ; Bocklitz, Thomas ; Neugebauer, Ute ; Popp, Jürgen:
Common Mistakes in Cross-Validating Classification Models.
In: Analytical Methods. Vol. 9 (2017) Issue 30 . - pp. 4410-4417.
DOI: https://doi.org/10.1039/C7AY01363A

Chernavskaia, Olga ; Guo, Shuxia ; Meyer, Tobias ; Vogler, Nadine ; Akimov, Denis ; Heuke, Sandro ; Heintzmann, Rainer ; Bocklitz, Thomas ; Popp, Jürgen:
Correction of mosaicking artefacts in multimodal images caused by uneven illumination.
In: Journal of Chemometrics. Vol. 31 (2017) Issue 6 . - e2901.
DOI: https://doi.org/10.1002/cem.2901

Krafft, Christoph ; Schmitt, Michael ; Schie, Iwan W. ; Cialla-May, Dana ; Matthäus, Christian ; Bocklitz, Thomas ; Popp, Jürgen:
Label-Free Molecular Imaging of Biological Cells and Tissues by Linear and Nonlinear Raman Spectroscopic Approaches.
In: Angewandte Chemie International Edition. Vol. 56 (2017) Issue 16 . - pp. 4392-4430.
DOI: https://doi.org/10.1002/anie.201607604

Pohling, Christoph ; Bocklitz, Thomas ; Duarte, Alex S. ; Emmanuello, Cinzia ; Ishikawa, Mariana S. ; Dietzeck, Benjamin ; Buckup, Tiago ; Uckermann, Ortrud ; Schackert, Gabriele ; Kirsch, Matthias ; Schmitt, Michael ; Popp, Jürgen ; Motzkus, Marcus:
Multiplex coherent anti-Stokes Raman scattering microspectroscopy of brain tissue with higher ranking data classification for biomedical imaging.
In: Journal of Biomedical Optics. Vol. 22 (2017) Issue 6 . - 066005.
DOI: https://doi.org/10.1117/1.JBO.22.6.066005

Bocklitz, Thomas ; Schmitt, Michael ; Lukić, Aleksandar ; Heuke, Sandro ; Chernavskaia, Olga ; Meyer, Tobias ; Popp, Jürgen:
Non-linear multimodal imaging for disease diagnostics and treatment monitoring.
In: International Conference on Biophotonics V. - Bellingham, Wash. : SPIE, 2017 . - 103400F
DOI: https://doi.org/10.1117/12.2275361

Kampe, Bernd ; Kloß, Sandra ; Bocklitz, Thomas ; Rösch, Petra ; Popp, Jürgen:
Recursive feature elimination in Raman spectra with support vector machines.
In: Frontiers of Optoelectronics. Vol. 10 (2017) . - pp. 273-279.
DOI: https://doi.org/10.1007/s12200-017-0726-4

Jahn, I. J. ; Žukovskaja, O. ; Zheng, X.-S. ; Weber, K. ; Bocklitz, Thomas ; Cialla-May, D. ; Popp, J.:
Surface-enhanced Raman spectroscopy and microfluidic platforms : challenges, solutions and potential applications.
In: Analyst. Vol. 142 (2017) Issue 7 . - pp. 1022-1047.
DOI: https://doi.org/10.1039/C7AN00118E

Guo, Shuxia ; Heinke, Ralf ; Stöckel, Stephan ; Rösch, Petra ; Bocklitz, Thomas ; Popp, Jürgen:
Towards an Improvement of Model Transferability for Raman Spectroscopy in Biological Applications.
In: Vibrational Spectroscopy. Vol. 91 (2017) . - pp. 111-118.
DOI: https://doi.org/10.1016/j.vibspec.2016.06.010

2016

Chernavskaia, Olga ; Bocklitz, Thomas ; Popp, Jürgen:
Verfahren zur Rekonstruktion eines Raman-Spektrums.
EP3465164B1 (2016)

Koch, Matthias:
Neue Strategien zur Lösung von Isomorphieproblemen.
Bayreuth , 2016 . - XIV, 178 p.
( Doctoral thesis, 2016 , Universität Bayreuth, Fakultät für Mathematik, Physik und Informatik)

Ryabchykov, Oleg ; Bocklitz, Thomas ; Ramoji, Anuradha ; Neugebauer, Ute ; Foerster, Martin ; Kroegel, Claus ; Bauer, Michael ; Kiehntopf, Michael ; Popp, Jürgen:
Automatization of spike correction in Raman spectra of biological samples.
In: Chemometrics and Intelligent Laboratory Systems. Vol. 155 (2016) . - pp. 1-6.
DOI: https://doi.org/10.1016/j.chemolab.2016.03.024

Chernavskaia, Olga ; Heuke, Sandro ; Vieth, Michael ; Friedrich, Oliver ; Schürmann, Sebastian ; Atreya, Raja ; Stallmach, Andreas ; Neurath, Markus F. ; Waldner, Maximilian ; Petersen, Iver ; Schmitt, Michael ; Bocklitz, Thomas ; Popp, Jürgen:
Beyond endoscopic assessment in inflammatory bowel disease : real-time histology of disease activity by non-linear multimodal imaging.
In: Scientific Reports. Vol. 6 (2016) . - 29239.
DOI: https://doi.org/10.1038/srep29239

Dochow, Sebastian ; Fatakdawala, Hussain ; Phipps, Jennifer E. ; Ma, Dinglong ; Bocklitz, Thomas ; Schmitt, Michael ; Bishop, John W. ; Margulies, Kenneth B. ; Marcu, Laura ; Popp, Jürgen:
Comparing Raman and Fluorescence lifetime spectroscopy from human atherosclerotic lesions using a bimodal probe.
In: Journal of Biophotonics. Vol. 9 (2016) Issue 9 . - pp. 958-966.
DOI: https://doi.org/10.1002/jbio.201500341

Fritzsch, Robby ; Geitner, Robert ; Bocklitz, Thomas ; Dietzek, Benjamin ; Schmitt, Michael ; Popp, Jürgen:
Dehydration of 3-octanol studied by 2D Raman, IR and NMR hetero correlation spectroscopy.
In: Asian Journal of Physics. Vol. 25 (2016) Issue 2 . - pp. 157-165.

Kumar B. N., Vinay ; Guo, Shuxia ; Bocklitz, Thomas ; Rösch, Petra ; Popp, Jürgen:
Demonstration of carbon catabolite repression in naphthalene degrading soil bacteria via Raman spectroscopy based stable isotope probing.
In: Analytical Chemistry. Vol. 88 (2016) Issue 15 . - pp. 7574-7582.
DOI: https://doi.org/10.1021/acs.analchem.6b01046

Koprowski, Robert ; Bocklitz, Thomas:
Image Processing in Biomedical Diagnosis.
In: Journal of Biophotonics. Vol. 9 (2016) Issue 5 . - pp. 434-435.
DOI: https://doi.org/10.1002/jbio.201670053

Silge, Anja ; Bocklitz, Thomas ; Ossig, Rainer ; Schnekenburger, Jürgen ; Rösch, Petra ; Popp, Jürgen:
The interaction of an amino-modified ZrO₂ nanomaterial with macrophages : An in situ investigation by Raman microspectroscopy.
In: Analytical and Bioanalytical Chemistry. Vol. 408 (2016) . - pp. 5935-5943.
DOI: https://doi.org/10.1007/s00216-016-9710-x

Hidi, Izabella J. ; Jahn, Martin ; Weber, Karina ; Bocklitz, Thomas ; Pletz, Mathias W. ; Cialla-May, Dana ; Popp, Jürgen:
Lab-on-a-Chip-Surface Enhanced Raman Scattering Combined with the Standard Addition Method : Toward the Quantification of Nitroxoline in Spiked Human Urine Samples.
In: Analytical Chemistry. Vol. 88 (2016) Issue 18 . - pp. 9173-9180.
DOI: https://doi.org/10.1021/acs.analchem.6b02316

Ryabchykov, Oleg ; Ramoji, Anuradha ; Bocklitz, Thomas ; Förster, Martin ; Hagel, Stefan ; Kroegel, Claus ; Bauer, Michael ; Neugebauer, Ute ; Popp, Jürgen:
Leukocyte subtypes classification by means of image processing.
In: Proceedings of the 2016 Federated Conference on Computer Science and Information Systems. - Piscataway, NJ : IEEE, 2016 . - pp. 309-316

Mühlig, Anna ; Bocklitz, Thomas ; Labugger, Ines ; Dees, Stefan ; Henk, Sandra ; Richter, Elvira ; Andres, Sönke ; Merker, Matthias ; Stöckel, Stephan ; Weber, Karina ; Cialla-May, Dana ; Popp, Jürgen:
LOC-SERS : A Promising Closed System for the Identification of Mycobacteria.
In: Analytical Chemistry. Vol. 88 (2016) Issue 16 . - pp. 7998-8004.
DOI: https://doi.org/10.1021/acs.analchem.6b01152

Geitner, Robert ; Kötteritzsch, Julia ; Siegmann, Michael ; Fritzsch, Robby ; Bocklitz, Thomas ; Hager, Martin D. ; Schubert, Ulrich Sigmar ; Gräfe, Stefanie ; Dietzek, Benjamin ; Schmitt, Michael ; Popp, Jürgen:
Molecular self-healing mechanisms between C₆₀-fullerene and anthracene unveiled by Raman and two-dimensional correlation spectroscopy.
In: Physical Chemistry Chemical Physics. Vol. 18 (2016) Issue 27 . - pp. 17973-17982.
DOI: https://doi.org/10.1039/C6CP03464K

Heuke, Sandro ; Chernavskaia, Olga ; Bocklitz, Thomas ; Legesse, Fisseha Bekele ; Meyer, Tobias ; Akimov, Denis ; Dirsch, Olaf ; Ernst, Günther ; von Eggeling, Ferdinand ; Petersen, Iver ; Guntinas-Lichius, Orlando ; Schmitt, Michael ; Popp, Jürgen:
Multimodal nonlinear microscopy of head and neck carcinoma : toward surgery assisting frozen section analysis.
In: Head & Neck. Vol. 38 (2016) Issue 10 . - pp. 1545-1552.
DOI: https://doi.org/10.1002/hed.24477

Guo, Shuxia ; Bocklitz, Thomas ; Popp, Jürgen:
Optimization of Raman-Spectrum Baseline Correction in Biological Application.
In: Analyst. Vol. 141 (2016) Issue 8 . - pp. 2396-2404.
DOI: https://doi.org/10.1039/C6AN00041J

Bocklitz, Thomas ; Salah, Firas Subhi ; Vogler, Nadine ; Heuke, Sandro ; Chernavskaia, Olga ; Schmidt, Carsten ; Waldner, Maximilian J. ; Greten, Florian R. ; Bräuer, Rolf ; Schmitt, Michael ; Stallmach, Andreas ; Petersen, Iver ; Popp, Jürgen:
Pseudo-HE images derived from CARS/TPEF/SHG multimodal imaging in combination with Raman-spectroscopy as a pathological screening tool.
In: BMC Cancer. Vol. 16 (2016) Issue 1 . - 534.
DOI: https://doi.org/10.1186/s12885-016-2520-x

Bocklitz, Thomas ; Guo, Shuxia ; Ryabchykov, Oleg ; Vogler, Nadine ; Popp, Jürgen:
Raman based molecular imaging and analytics : a magic bullet for biomedical applications!?
In: Analytical Chemistry. Vol. 88 (2016) Issue 1 . - pp. 133-151.
DOI: https://doi.org/10.1021/acs.analchem.5b04665

Galler, Kerstin ; Requardt, Robert Pascal ; Glaser, Uwe ; Markwart, Robby ; Bocklitz, Thomas ; Bauer, Michael ; Popp, Jürgen ; Neugebauer, Ute:
Single cell analysis in native tissue : Quantification of the retinoid content of hepatic stellate cells.
In: Scientific Reports. Vol. 6 (2016) . - 24155.
DOI: https://doi.org/10.1038/srep24155

Kämmer, Evelyn ; Götz, Isabell ; Bocklitz, Thomas ; Stöckel, Stephan ; Dellith, Andrea ; Cialla-May, Dana ; Weber, Karina ; Zell, Roland ; Dellith, Jan ; Deckert, Volker ; Popp, Jürgen:
Single particle analysis of herpes simplex virus : Comparing the dimensions of one and the same virions via atomic force and scanning electron microscopy.
In: Analytical and Bioanalytical Chemistry. Vol. 408 (2016) Issue 15 . - pp. 4035-4041.
DOI: https://doi.org/10.1007/s00216-016-9492-1

Latorre, Federico ; Kupfer, Stephan ; Bocklitz, Thomas ; Kinzel, Daniel ; Trautmann, Steffen ; Gräfe, Stefanie ; Deckert, Volker:
Spatial resolution of tip-enhanced Raman spectroscopy : DFT assessment of the chemical effect.
In: Nanoscale. Vol. 8 (2016) Issue 19 . - pp. 10229-10239.
DOI: https://doi.org/10.1039/C6NR00093B

Vogler, Nadine ; Bocklitz, Thomas ; Salah, Firas Subhi ; Schmidt, Carsten ; Bräuer, Rolf ; Cui, Tiantian ; Mireskandari, Masoud ; Greten, Florian R. ; Schmitt, Michael ; Stallmach, Andreas ; Petersen, Iver ; Popp, Jürgen:
Systematic evaluation of the biological variance within the Raman based colorectal tissue diagnostics.
In: Journal of Biophotonics. Vol. 9 (2016) Issue 5 . - pp. 533-541.
DOI: https://doi.org/10.1002/jbio.201500237

Radu, Andreea Ioana ; Ryabchykov, Oleg ; Bocklitz, Thomas ; Huebner, Uwe ; Weber, Karina ; Cialla-May, Dana ; Popp, Jürgen:
Towards food analytics : fast estimation of lycopene and β-carotene content in tomatoes based on surface enhanced Raman spectroscopy (SERS).
In: Analyst. Vol. 141 (2016) Issue 14 . - pp. 4447-4455.
DOI: https://doi.org/10.1039/C6AN00390G

2015

Popp, Jürgen ; Bocklitz, Thomas ; Chernavskaia, Olga ; Meyer, Tobias:
Eigenschaftsmessung auf einer biologischen Gewebeprobe.
EP3182366B1 (2015)

Winetzhammer, Sabine:
Modellgetriebene Entwicklung mit Graphtransformationen.
Bayreuth , 2015 . - X, 258 p.
( Doctoral thesis, 2015 , Universität Bayreuth, Fakultät für Mathematik, Physik und Informatik)

Egodage, Kokila D. ; Dochow, Sebastian ; Bocklitz, Thomas ; Chernavskaia, Olga ; Matthaeus, Christian ; Schmitt, Michael ; Popp, Jürgen:
The combination of optical coherence tomography and Raman spectroscopy for tissue characterization.
In: Journal of Biomedical Photonics & Engineering. Vol. 1 (2015) Issue 2 . - pp. 169-177.
DOI: https://doi.org/10.18287/jbpe-2015-1-2-169

Dochow, Sebastian ; Ma, Dinglong ; Latka, Ines ; Bocklitz, Thomas ; Hartl, Brad ; Bec, Julien ; Fatakdawala, Hussain ; Marple, Eric ; Urmey, Kirk ; Wachsmann-Hogiu, Sebastian ; Schmitt, Michael ; Marcu, Laura ; Popp, Jürgen:
Combined fiber probe for fluorescence lifetime and Raman spectroscopy.
In: Analytical and Bioanalytical Chemistry. Vol. 407 (2015) . - pp. 8291-8301.
DOI: https://doi.org/10.1007/s00216-015-8800-5

Bocklitz, Thomas:
Combining Raman Imaging, Mass Spectrometry Imaging, and AFM.
In: Spectroscopy. Vol. 30 (2015) Issue 12 . - pp. 9-22.

Zhang, Ying ; Kupfer, Stephan ; Zedler, Linda ; Bocklitz, Thomas ; Guthmuller, Julien ; Rau, Sven ; Dietzek, Benjamin:
In Situ Spectroelectrochemical and Theoretical Study on the Oxidation of a 4H-Imidazole-Ruthenium Dye Adsorbed on Nanocrystalline TiO₂ Thin Film Electrodes.
In: Physical Chemistry Chemical Physics. Vol. 17 (2015) Issue 44 . - pp. 29637-29646.
DOI: https://doi.org/10.1039/C5CP04484G

Olschewski, Konstanze ; Kämmer, Evelyn ; Stöckel, Stephan ; Bocklitz, Thomas ; Deckert-Gaudig, Tanja ; Zell, Roland ; Cialla-May, Dana ; Weber, Karina ; Deckert, Volker ; Popp, Jürgen:
A Manual and an automatic TERS based virus discrimination.
In: Nanoscale. Vol. 7 (2015) Issue 10 . - pp. 4545-4552.
DOI: https://doi.org/10.1039/C4NR07033J

Vogler, Nadine ; Heuke, Sandro ; Bocklitz, Thomas ; Schmitt, Michael ; Popp, Jürgen:
Multimodal Imaging Spectroscopy of Tissue.
In: Annual Review of Analytical Chemistry. Vol. 8 (2015) . - pp. 359-387.
DOI: https://doi.org/10.1146/ANNUREV-ANCHEM-071114-040352

Bocklitz, Thomas ; Bräutigam, Katharina ; Urbanek, Annett ; Hoffmann, Franziska ; von Eggeling, Ferdinand ; Ernst, Günther ; Schmitt, Michael ; Schubert, Ulrich ; Guntinas-Lichius, Orlando ; Popp, Jürgen:
Novel workflow for combining Raman-spectroscopy and MALDI-MSI for tissue based studies.
In: Analytical and Bioanalytical Chemistry. Vol. 407 (2015) Issue 26 . - pp. 7865-7873.
DOI: https://doi.org/10.1007/s00216-015-8987-5

Kämmer, Evelyn ; Olschewski, Konstanze ; Stöckel, Stephan ; Rösch, Petra ; Weber, Karina ; Cialla-May, Dana ; Bocklitz, Thomas ; Popp, Jürgen:
Quantitative SERS studies by combining LOC-SERS with the standard addition method.
In: Analytical and Bioanalytical Chemistry. Vol. 407 (2015) Issue 29 . - pp. 8925-8929.
DOI: https://doi.org/10.1007/s00216-015-9045-z

Buchmann, Thomas ; Baumgartl, Johannes ; Henrich, Dominik ; Westfechtel, Bernhard:
Robots and their variability : A societal challenge and a potential solution.
In: IEEE/ACM 5th International Workshop on Product Line Approaches in Software Engineering. - Florence, Italy , 2015 . - pp. 27-30
DOI: https://doi.org/10.1109/PLEASE.2015.15

Legesse, Fisseha Bekele ; Chernavskaia, Olga ; Heuke, Sandro ; Bocklitz, Thomas ; Meyer, Tobias ; Popp, Jürgen ; Heintzmann, Rainer:
Seamless Stitching of Tile Scan Microscope Images.
In: Journal of Microscopy. Vol. 258 (2015) Issue 3 . - pp. 223-232.
DOI: https://doi.org/10.1111/jmi.12236

Silge, Anja ; Abdou, Elias ; Schneider, Kilian ; Meisel, Susann ; Bocklitz, Thomas ; Lu-Walther, Hui-Wen ; Heintzmann, Rainer ; Rösch, Petra ; Popp, Jürgen:
Shedding light on host niches : Label-free in situ detection of Mycobacterium gordonae via carotenoids in macrophages by Raman microspectroscopy.
In: Cellular Microbiology. Vol. 17 (2015) Issue 6 . - pp. 832-842.
DOI: https://doi.org/10.1111/cmi.12404

Bocklitz, Thomas ; Dörfer, T. ; Heinke, R. ; Schmitt, M. ; Popp, J.:
Spectrometer calibration protocol for Raman spectra recorded with different excitation wavelengths.
In: Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy. Vol. 149 (2015) . - pp. 544-549.
DOI: https://doi.org/10.1016/j.saa.2015.04.079

Jahn, Martin ; Patze, Sophie ; Bocklitz, Thomas ; Weber, Karina ; Cialla-May, Dana ; Popp, Jürgen:
Towards SERS based applications in food analytics : Lipophilic sensor layers for the detection of Sudan III in food matrices.
In: Analytica Chimica Acta. Vol. 860 (2015) . - pp. 43-50.
DOI: https://doi.org/10.1016/j.aca.2015.01.005

Berry, David ; Mader, Esther ; Lee, Tae Kwon ; Woebken, Dagmar ; Wang, Yun ; Zhu, Di ; Palatinszky, Marton ; Schintlmeister, Arno ; Schmid, Markus C. ; Hanson, Buck T. ; Shterzer, Naama ; Mizrahi, Itzhak ; Rauch, Isabella ; Decker, Thomas ; Bocklitz, Thomas ; Popp, Jürgen ; Gibson, Christopher M. ; Fowler, Patrick W. ; Huang, Wei E. ; Wagner, Michael:
Tracking heavy water (D₂O) incorporation for identifying and sorting active microbial cells.
In: Proceedings of the National Academy of Sciences of the United States of America. Vol. 112 (2015) Issue 2 . - E194-E203.
DOI: https://doi.org/10.1073/pnas.1420406112

Geitner, R. ; Kötteritzsch, J. ; Siegmann, M. ; Bocklitz, Thomas ; Hager, M. D. ; Schubert, U. S. ; Gräfe, S. ; Dietzek, B. ; Schmitt, M. ; Popp, J.:
Two-dimensional Raman correlation spectroscopy reveals molecular structural changes during temperature-induced self-healing in polymers based on the Diels-Alder reaction.
In: Physical Chemistry Chemical Physics. Vol. 17 (2015) Issue 35 . - pp. 22587-22595.
DOI: https://doi.org/10.1039/C5CP02151K

Silge, Anja ; Bräutigam, Katharina ; Bocklitz, Thomas ; Rösch, Petra ; Vennemann, Antje ; Schmitz, Inge ; Popp, Jürgen ; Wiemann, Martin:
ZrO₂ nanoparticles labeled via a native protein corona : detection by fluorescence microscopy and Raman microspectroscopy in rat lungs.
In: Analyst. Vol. 140 (2015) Issue 15 . - pp. 5120-5128.
DOI: https://doi.org/10.1039/C5AN00942A

2014

Bräutigam, Katharina ; Bocklitz, Thomas ; Silge, Anja ; Dierker, Christian ; Ossig, Rainer ; Schnekenburger, Jürgen ; Cialla, Dana ; Rösch, Petra ; Popp, Jürgen:
Comparative two- and three-dimensional analysis of nanoparticle localization in different cell types by Raman spectroscopic imaging.
In: Journal of Molecular Structure. Vol. 1073 (2014) . - pp. 44-50.
DOI: https://doi.org/10.1016/j.molstruc.2014.05.013

Schmidt, C. ; Vogler, N. ; Bocklitz, Thomas ; Schmitt, M. ; Salah, F. S. ; Bräuer, R. ; Petersen, I. ; Popp, J. ; Stallmach, A.:
Differenzierung von Adenomen und Karzinomen von normalen epithelialen Zellen des Kolons in einem karzinogen-induzierten kolorektalen Tumormodell bei p53-defizienten Mäusen mittels RAMAN-Spektroskopie.
In: Zeitschrift für Gastroenterologie. Vol. 52 (2014) . - KG151.
DOI: https://doi.org/10.1055/s-0034-1386173

Neugebauer, Ute ; Trenkmann, Sabine ; Bocklitz, Thomas ; Schmerler, Diana ; Kiehntopf, Michael ; Popp, Jürgen:
Fast differentiation of SIRS and sepsis from blood plasma of ICU patients using Raman spectroscopy.
In: Journal of Biophotonics. Vol. 7 (2014) Issue 3-4 . - pp. 232-240.
DOI: https://doi.org/10.1002/jbio.201400010

Bocklitz, Thomas ; Schmitt, Michael ; Popp, Jürgen:
Image Processing : Chemometric Approaches to Analyze Optical Molecular Images.
In: Popp, Jürgen (ed.): Ex-vivo and In-vivo Optical Molecular Pathology. - Weinheim : Wiley-VCH, 2014 . - pp. 215-248
DOI: https://doi.org/10.1002/9783527681921.ch7

Schmidt, Carsten ; Vogler, Nadine ; Bocklitz, Thomas ; Schmitt, Michael ; Bräuer, Rolf ; Petersen, Iver ; Popp, Jügen ; Stallmach, Andreas:
Mo1508 Differentiation of Colonic Adenomas and Carcinomas From Normal Epithelial Cells in a p53-Ko-Carcinogen-Induced Colorectal Tumor Mouse Model by Means of Raman Spectroscopic Imaging.
In: Gastrointestinal Endoscopy. Vol. 79 (2014) Issue 5, Supplement . - AB463.
DOI: https://doi.org/10.1016/j.gie.2014.02.685

Kämmer, Evelyn ; Olschewski, Konstanze ; Bocklitz, Thomas ; Rösch, Petra ; Weber, Karina ; Cialla, Dana ; Popp, Jürgen:
A new calibration concept for a reproducible quantitative detection based on SERS measurements in a microfluidic device demonstrated on the model analyte adenine.
In: Physical Chemistry Chemical Physics. Vol. 16 (2014) Issue 19 . - pp. 9056-9063.
DOI: https://doi.org/10.1039/c3cp55312d

Neugebauer, Ute ; Kurz, Christian ; Bocklitz, Thomas ; Berger, Tina ; Velten, Thomas ; Clement, Joachim H. ; Krafft, Christoph ; Popp, Jürgen:
Raman-Spectroscopy Based Cell Identification on a Microhole Array Chip.
In: Micromachines. Vol. 5 (2014) Issue 2 . - pp. 204-215.
DOI: https://doi.org/10.3390/mi5020204

Bocklitz, Thomas ; Kämmer, Evelyn ; Stöckel, Stephan ; Cialla-May, Dana ; Weber, Karina ; Zell, Roland ; Deckert, Volker ; Popp, Jürgen:
Single virus detection by means of atomic force microscopy in combination with advanced image analysis.
In: Journal of Structural Biology. Vol. 188 (2014) Issue 1 . - pp. 30-38.
DOI: https://doi.org/10.1016/j.jsb.2014.08.008

2013

Schwarz, Martha ; Pahlow, Susanne ; Bocklitz, Thomas ; Steinbrücker, Carolin ; Cialla, Dana ; Weber, Karina ; Popp, Jürgen:
Convenient detection of E. coli in Ringer's solution.
In: Analyst. Vol. 138 (2013) Issue 20 . - pp. 5866-5870.
DOI: https://doi.org/10.1039/C3AN01240A

Bocklitz, Thomas ; Crecelius, Anna C. ; Matthäus, Christian ; Tarcea, Nicolae ; von Eggeling, Ferdinand ; Schmitt, Michael ; Schubert, Ulrich S. ; Popp, Jürgen:
Deeper understanding of biological tissue : Quantitative correlation of MALDI-TOF and Raman imaging.
In: Analytical Chemistry. Vol. 85 (2013) Issue 22 . - pp. 10829-10834.
DOI: https://doi.org/10.1021/ac402175c

Bräutigam, Katharina ; Bocklitz, Thomas ; Schmitt, Michael ; Rösch, Petra ; Popp, Jürgen:
Raman spectroscopic imaging for the real-time detection of chemical changes associated with docetaxel exposure.
In: ChemPhysChem. Vol. 14 (2013) Issue 3 . - pp. 550-553.
DOI: https://doi.org/10.1002/cphc.201200800

Beleites, Claudia ; Neugebauer, Ute ; Bocklitz, Thomas ; Krafft, Christoph ; Popp, Jürgen:
Sample Size Planning for Classification Models.
In: Analytica Chimica Acta. Vol. 760 (2013) . - pp. 25-33.
DOI: https://doi.org/10.1016/j.aca.2012.11.007

Becker-Putsche, Melanie ; Bocklitz, Thomas ; Clement, Joachim H. ; Rösch, Petra ; Popp, Jürgen:
Toward improving fine needle aspiration cytology by applying Raman microspectroscopy.
In: Journal of Biomedical Optics. Vol. 18 (2013) Issue 4 . - 047001.
DOI: https://doi.org/10.1117/1.JBO.18.4.047001

Buchmann, Thomas ; Baumgartl, Johannes ; Henrich, Dominik ; Westfechtel, Bernhard:
Towards A Domain-specific Language For Pick-And-Place Applications.
In: The Fourth International Workshop on Domain-Specific Languages and Models for Robotic Systems. - Tokyo, Japan , 2013
DOI: https://doi.org/10.48550/arXiv.1401.1376

Baumgartl, Johannes ; Buchmann, Thomas ; Henrich, Dominik ; Westfechtel, Bernhard:
Towards Easy Robot Programming : Using DSLs, Code Generators and Software Product Lines.
In: Proceedings of the 8th International Joint Conference on Software Technologies. Volume 0ICSOFT. - Reykjavík, Iceland , 2013 . - pp. 548-554
DOI: https://doi.org/10.5220/0004585305480554

2012

Bielecki, Christiane ; Marquardt, Claudio ; Stallmach, Andreas ; Bocklitz, Thomas ; Schmitt, Michael ; Popp, Jürgen ; Krafft, Christoph ; Gharbi, Akram ; Knösel, Thomas:
Classification of inflammatory bowel diseases by means of Raman spectroscopic imaging of epithelium cells.
In: Journal of Biomedical Optics. Vol. 17 (2012) Issue 7 . - 076030.
DOI: https://doi.org/10.1117/1.JBO.17.7.076030

Bergner, Norbert ; Bocklitz, Thomas ; Romeike, Bernd F. M. ; Reichart, Rupert ; Kalff, Rolf ; Krafft, Christoph ; Popp, Jürgen:
Identification of primary tumors of brain metastases by Raman imaging and support vector machines.
In: Chemometrics and Intelligent Laboratory Systems. Vol. 117 (2012) . - pp. 224-232.
DOI: https://doi.org/10.1016/j.chemolab.2012.02.008

Walter, Angela ; Kuhri, Susanne ; Reinicke, Martin ; Bocklitz, Thomas ; Schumacher, Wilm ; Rösch, Petra ; Merten, Dirk ; Büchel, Georg ; Kothe, Erika ; Popp, Jürgen:
Raman spectroscopic detection of Nickel impact on single Streptomyces cells : possible bioindicators for heavy metal contamination.
In: Journal of Raman Spectroscopy. Vol. 43 (2012) Issue 8 . - pp. 1058-1064.
DOI: https://doi.org/10.1002/jrs.3126

Hartmann, Katharina ; Putsche-Becker, Melanie ; Bocklitz, Thomas ; Pachmann, Katharina ; Niendorf, Axel ; Rösch, Petra ; Popp, Jürgen:
A study of Docetaxel-induced effects in MCF-7 cells by means of Raman microspectroscopy.
In: Analytical and Bioanalytical Chemistry. Vol. 403 (2012) . - pp. 745-753.
DOI: https://doi.org/10.1007/s00216-012-5887-9

Ramoji, Anuradha ; Neugebauer, Ute ; Bocklitz, Thomas ; Förster, Martin ; Kiehntopf, Michael ; Bauer, Michael ; Popp, Jürgen:
Toward a Spectroscopic Hemogram : Raman Spectroscopic Differentiation of the Two Most Abundant Leukocytes from Peripheral Blood.
In: Analytical Chemistry. Vol. 84 (2012) Issue 12 . - pp. 5335-5342.
DOI: https://doi.org/10.1021/ac3007363

2011

Popp, Jürgen ; März, Anne ; Bocklitz, Thomas:
Verfahren zur Korrektur von Raman-spektroskopischen Daten in einem Mehrphasensystem.
DE10 2011 016 059.0 (2011)

Dörfer, Thomas ; Bocklitz, Thomas ; Tarcea, Nicolae ; Schmitt, Michael ; Popp, Jürgen:
Checking and Improving Calibration of Raman Spectra using Chemometric Approaches.
In: Zeitschrift für Physikalische Chemie : International Journal of Research in Physical Chemistry and Chemical Physics. Vol. 225 (2011) . - pp. 753-764.
DOI: https://doi.org/10.1524/zpch.2011.0077

Neugebauer, U. ; Dochow, S. ; Krafft, C. ; Bocklitz, Thomas ; Clement, J. H. ; Popp, J.:
Diagnostics of tumor cells by combination of Raman spectroscopy and microfluidics.
In: Clinical and Biomedical Spectroscopy and Imaging II. - Bellingham, Wash. : SPIE, 2011 . - 8087-16 . - (Proceedings of SPIE ; 8087 )
DOI: https://doi.org/10.1364/ECBO.2011.80870J

Walter, Angela ; Schumacher, Wilm ; Bocklitz, Thomas ; Reinicke, Martin ; Rösch, Petra ; Kothe, Erika ; Popp, Jürgen:
From bulk to single-cell classification of the filamentous growing Streptomyces bacteria by means of Raman Spectroscopy.
In: Applied Spectroscopy. Vol. 65 (2011) Issue 10 . - pp. 1116-1125.

Bocklitz, Thomas ; Walter, Angela ; Hartmann, Katharina ; Rösch, Petra ; Popp, Jürgen:
How to Pre-process Raman Spectra for reliable and stable models?
In: Analytica Chimica Acta. Vol. 704 (2011) Issue 1-2 . - pp. 47-56.
DOI: https://doi.org/10.1016/j.aca.2011.06.043

März, Anne ; Mönch, Bettina ; Walter, Angela ; Bocklitz, Thomas ; Schumacher, Wilm ; Rösch, Petra ; Kiehntopf, Michael ; Popp, Jürgen:
The multifunctional application of microfluidic lab-on-a-chip surface enhanced Raman spectroscopy (LOC-SERS) within the field of bioanalytics.
In: Clinical and Biomedical Spectroscopy and Imaging II. - Bellingham, Wash. : SPIE, 2011 . - 8087-07 . - (Proceedings of SPIE ; 8087 )
DOI: https://doi.org/10.1364/ECBO.2011.808707

März, Anne ; Bocklitz, Thomas ; Popp, Jürgen:
Online-Calibration for Reliable and Robust Lab-on-a-Chip Surface Enhanced Raman Spectroscopy Measurement in a Liquid/Liquid Segmented Flow.
In: Analytical Chemistry. Vol. 83 (2011) Issue 21 . - pp. 8337-8340.
DOI: https://doi.org/10.1021/ac2015799

Walter, Angela ; Reinicke, Martin ; Bocklitz, Thomas ; Schumacher, Wilm ; Rösch, Petra ; Kothe, Erika ; Popp, Jürgen:
Raman Spectroscopic Detection of Physiology Changes in Plasmid-bearing Escherichia coli with and without Antibiotic Treatment.
In: Analytical and Bioanalytical Chemistry. Vol. 400 (2011) Issue 9 . - pp. 2763-2773.
DOI: https://doi.org/10.1007/s00216-011-4819-4

Dochow, Sebastian ; Krafft, Christoph ; Neugebauer, Ute ; Bocklitz, Thomas ; Henkel, Thomas ; Albert, Jens ; Popp, Jürgen:
Tumor Cell Identification by Means of Raman Spectroscopy in Combination with Optical Traps and microfluidic environments.
In: Lab on a Chip. Vol. 11 (2011) Issue 8 . - pp. 1484-1490.
DOI: https://doi.org/10.1039/C0LC00612B

Bocklitz, Thomas:
Untersuchungen zu den Auswertestrategien RAMAN-Effekt-basierender Experimente.
Jena , 2011
( Doctoral thesis, 2011, Friedrich-Schiller-Universität Jena, Chemisch-Geowissenschaftliche Fakultät)

2010

Walter, Angela ; Erdmann, Susann ; Bocklitz, Thomas ; Jung, Elke-Martina ; Vogler, Nadine ; Akimov, Denis ; Dietzek, Benjamin ; Rösch, Petra ; Kothe, Erika ; Popp, Jürgen:
Analysis of the cytochrome distribution via linear and nonlinear Raman spectroscopy.
In: Analyst. Vol. 135 (2010) Issue 5 . - pp. 908-917.
DOI: https://doi.org/10.1039/B921101B

Neugebauer, Ute ; Clement, Joachim H. ; Bocklitz, Thomas ; Krafft, Christoph ; Popp, Jürgen:
Identification and Differentiation of single cells from peripheral blood by Raman spectroscopic imaging.
In: Journal of Biophotonics. Vol. 3 (2010) Issue 8-9 . - pp. 579-587.
DOI: https://doi.org/10.1002/jbio.201000020

Vogler, Nadine ; Bocklitz, Thomas ; Mariani, Melissa ; Deckert, Volker ; Markova, Aneta ; Schelkens, Peter ; Rösch, Petra ; Akimov, Denis ; Dietzek, Benjamin ; Popp, Jürgen:
Separation of CARS image contributions with a Gaussian Mixture Model.
In: Journal of the Optical Society of America A. Vol. 27 (2010) Issue 6 . - pp. 1361-1371.
DOI: https://doi.org/10.1364/JOSAA.27.001361

Neugebauer, U. ; Bocklitz, Thomas ; Clement, J. H. ; Krafft, C. ; Popp, J.:
Towards detection and identification of circulating tumour cells using Raman spectroscopy.
In: Analyst. Vol. 135 (2010) Issue 12 . - pp. 3178-3182.
DOI: https://doi.org/10.1039/c0an00608d

2009

Bocklitz, Thomas ; Putsche, Melanie ; Stüber, Carsten ; Käs, Josef ; Niendorf, Axel ; Rösch, Petra ; Popp, Jürgen:
A comprehensive study of classification methods for medical diagnosis.
In: Journal of Raman Spectroscopy. Vol. 40 (2009) Issue 12 . - pp. 1759-1765.
DOI: https://doi.org/10.1002/jrs.2529

März, Anne ; Ackermann, Katrin R. ; Malsch, Daniéll ; Bocklitz, Thomas ; Henkel, Thomas ; Popp, Jürgen:
Towards a quantitative SERS approach : online monitoring of analytes in a microfluidic system with isotope-edited internal standards.
In: Journal of Biophotonics. Vol. 2 (2009) Issue 4 . - pp. 232-242.
DOI: https://doi.org/10.1002/jbio.200810069

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