ERef Bayreuth
Institutionen der Universität Bayreuth
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 | Eine Ebene nach oben ... |
- Universität Bayreuth (59410)
- Fakultäten (55784)
- Fakultät für Biologie, Chemie und Geowissenschaften (16867)
- Fachgruppe Chemie (5012)
- Lehrstuhl Biochemie III - Proteindesign (78)
- Lehrstuhl Biochemie III - Proteindesign - Univ.-Prof. Dr. Birte Höcker (78)
- Lehrstuhl Biochemie III - Proteindesign (78)
- Fachgruppe Chemie (5012)
- Fakultät für Biologie, Chemie und Geowissenschaften (16867)
- Fakultäten (55784)
Anzahl der Einträge auf dieser Ebene: 78.
B
Beck, Julian ; Shanmugaratnam, Sooruban ; Höcker, Birte:
Diversifying de novo TIM barrels by hallucination.
In: Protein Science. Bd. 33 (2024) Heft 6 . - e5001.
DOI: https://doi.org/10.1002/pro.5001
Diversifying de novo TIM barrels by hallucination.
In: Protein Science. Bd. 33 (2024) Heft 6 . - e5001.
DOI: https://doi.org/10.1002/pro.5001
Banda-Vázquez, Jesús ; Shanmugaratnam, Sooruban ; Rodríguez-Sotres, Rogelio ; Torres-Larios, Alfredo ; Höcker, Birte ; Sosa-Peinado, Alejandro:
Redesign of LAOBP to bind novel l-amino acid ligands.
In: Protein Science. Bd. 27 (2018) Heft 5 . - S. 957-968.
DOI: https://doi.org/10.1002/pro.3403
Redesign of LAOBP to bind novel l-amino acid ligands.
In: Protein Science. Bd. 27 (2018) Heft 5 . - S. 957-968.
DOI: https://doi.org/10.1002/pro.3403
Bharat, Tanmay A. M. ; Eisenbeis, Simone ; Zeth, Kornelius ; Höcker, Birte:
A βα-barrel built by the combination of fragments from different folds.
In: Proceedings of the National Academy of Sciences of the United States of America. Bd. 105 (2008) Heft 29 . - S. 9942-9947.
DOI: https://doi.org/10.1073/pnas.0802202105
A βα-barrel built by the combination of fragments from different folds.
In: Proceedings of the National Academy of Sciences of the United States of America. Bd. 105 (2008) Heft 29 . - S. 9942-9947.
DOI: https://doi.org/10.1073/pnas.0802202105
C
Claren, Jörg ; Malisi, Christoph ; Höcker, Birte ; Sterner, Reinhard:
Establishing wild-type levels of catalytic activity on natural and artificial (βα)8-barrel protein scaffolds.
In: Proceedings of the National Academy of Sciences of the United States of America. Bd. 106 (2009) Heft 10 . - S. 3704-3709.
DOI: https://doi.org/10.1073/pnas.0810342106
Establishing wild-type levels of catalytic activity on natural and artificial (βα)8-barrel protein scaffolds.
In: Proceedings of the National Academy of Sciences of the United States of America. Bd. 106 (2009) Heft 10 . - S. 3704-3709.
DOI: https://doi.org/10.1073/pnas.0810342106
E
Eisenbeis, Simone ; Proffitt, William ; Coles, Murray ; Truffault, Vincent ; Shanmugaratnam, Sooruban ; Meiler, Jens ; Höcker, Birte:
Potential of fragment recombination for rational design of proteins.
In: Journal of the American Chemical Society. Bd. 134 (2012) Heft 9 . - S. 4019-4022.
DOI: https://doi.org/10.1021/ja211657k
Potential of fragment recombination for rational design of proteins.
In: Journal of the American Chemical Society. Bd. 134 (2012) Heft 9 . - S. 4019-4022.
DOI: https://doi.org/10.1021/ja211657k
Eisenbeis, Simone ; Höcker, Birte:
Evolutionary mechanism as a template for protein engineering.
In: Journal of Peptide Science. Bd. 16 (2010) Heft 10 . - S. 538-544.
DOI: https://doi.org/10.1002/psc.1233
Evolutionary mechanism as a template for protein engineering.
In: Journal of Peptide Science. Bd. 16 (2010) Heft 10 . - S. 538-544.
DOI: https://doi.org/10.1002/psc.1233
F
Ferruz, Noelia ; Höcker, Birte:
Dreaming ideal protein structures.
In: Nature Biotechnology. Bd. 40 (2022) Heft 2 . - S. 171-172.
DOI: https://doi.org/10.1038/s41587-021-01196-9
Dreaming ideal protein structures.
In: Nature Biotechnology. Bd. 40 (2022) Heft 2 . - S. 171-172.
DOI: https://doi.org/10.1038/s41587-021-01196-9
Ferruz, Noelia ; Schmidt, Steffen ; Höcker, Birte:
ProtGPT2 is a deep unsupervised language model for protein design.
In: Nature Communications. Bd. 13 (2022) . - 4348.
DOI: https://doi.org/10.1038/s41467-022-32007-7
ProtGPT2 is a deep unsupervised language model for protein design.
In: Nature Communications. Bd. 13 (2022) . - 4348.
DOI: https://doi.org/10.1038/s41467-022-32007-7
Ferruz, Noelia ; Höcker, Birte:
Controllable protein design with language models.
In: Nature Machine Intelligence. Bd. 4 (2022) . - S. 521-532.
DOI: https://doi.org/10.1038/s42256-022-00499-z
Controllable protein design with language models.
In: Nature Machine Intelligence. Bd. 4 (2022) . - S. 521-532.
DOI: https://doi.org/10.1038/s42256-022-00499-z
Ferruz, Noelia ; Michel, Florian ; Lobos, Francisco ; Schmidt, Steffen ; Höcker, Birte:
Fuzzle 2.0 : Ligand Binding in Natural Protein Building Blocks.
In: Frontiers in Molecular Biosciences. Bd. 8 (2021) . - 715972.
DOI: https://doi.org/10.15495/EPub_UBT_00006453
Fuzzle 2.0 : Ligand Binding in Natural Protein Building Blocks.
In: Frontiers in Molecular Biosciences. Bd. 8 (2021) . - 715972.
DOI: https://doi.org/10.15495/EPub_UBT_00006453
Ferruz, Noelia ; Schmidt, Steffen ; Höcker, Birte:
ProteinTools : a toolkit to analyze protein structures.
In: Nucleic Acids Research. Bd. 49 (2021) Heft W1 . - W559-W566.
DOI: https://doi.org/10.15495/EPub_UBT_00006493
ProteinTools : a toolkit to analyze protein structures.
In: Nucleic Acids Research. Bd. 49 (2021) Heft W1 . - W559-W566.
DOI: https://doi.org/10.15495/EPub_UBT_00006493
Ferruz, Noelia ; Lobos, Francisco ; Lemm, Dominik ; Toledo-Patiño, Saacnicteh ; Farías-Rico, José Arcadio ; Schmidt, Steffen ; Höcker, Birte:
Identification and Analysis of Natural Building Blocks for Evolution-Guided Fragment-Based Protein Design.
In: Journal of Molecular Biology. Bd. 432 (2020) Heft 13 . - S. 3898-3914.
DOI: https://doi.org/10.1016/j.jmb.2020.04.013
Identification and Analysis of Natural Building Blocks for Evolution-Guided Fragment-Based Protein Design.
In: Journal of Molecular Biology. Bd. 432 (2020) Heft 13 . - S. 3898-3914.
DOI: https://doi.org/10.1016/j.jmb.2020.04.013
Farías-Rico, José Arcadio ; Schmidt, Steffen ; Höcker, Birte:
Evolutionary relationship of two ancient protein superfolds.
In: Nature Chemical Biology. Bd. 10 (2014) Heft 9 . - S. 710-715.
DOI: https://doi.org/10.1038/nchembio.1579
Evolutionary relationship of two ancient protein superfolds.
In: Nature Chemical Biology. Bd. 10 (2014) Heft 9 . - S. 710-715.
DOI: https://doi.org/10.1038/nchembio.1579
Feldmeier, Kaspar ; Höcker, Birte:
Computational protein design of ligand binding and catalysis.
In: Current Opinion in Chemical Biology. Bd. 17 (2013) Heft 6 . - S. 929-933.
DOI: https://doi.org/10.1016/j.cbpa.2013.10.002
Computational protein design of ligand binding and catalysis.
In: Current Opinion in Chemical Biology. Bd. 17 (2013) Heft 6 . - S. 929-933.
DOI: https://doi.org/10.1016/j.cbpa.2013.10.002
Farías-Rico, José Arcadio ; Höcker, Birte:
Design of chimeric proteins by combination of subdomain-sized fragments.
In: Keating, Amy E. (Hrsg.): Methods in protein design. - Amsterdam : Academic Press, 2013 . - S. 389-405 . - (Methods in Enzymology ; 523 )
DOI: https://doi.org/10.1016/B978-0-12-394292-0.00018-7
Design of chimeric proteins by combination of subdomain-sized fragments.
In: Keating, Amy E. (Hrsg.): Methods in protein design. - Amsterdam : Academic Press, 2013 . - S. 389-405 . - (Methods in Enzymology ; 523 )
DOI: https://doi.org/10.1016/B978-0-12-394292-0.00018-7
G
Gisdon, Florian J. ; Kynast, Josef ; Ayyildiz, Merve ; Hine, Anna V. ; Plückthun, Andreas ; Höcker, Birte:
Modular peptide binders : development of a predictive technology as alternative for reagent antibodies.
In: Biological Chemistry. Bd. 403 (2022) Heft 5-6 . - S. 535-543.
DOI: https://doi.org/10.1515/hsz-2021-0384
Modular peptide binders : development of a predictive technology as alternative for reagent antibodies.
In: Biological Chemistry. Bd. 403 (2022) Heft 5-6 . - S. 535-543.
DOI: https://doi.org/10.1515/hsz-2021-0384
H
Höcker, Birte ; Lu, Peilong ; Glasgow, Anum ; Marks, Debora S. ; Chatterjee, Pranam ; Slusky, Joanna S. G. ; Schueler-Furman, Ora ; Huang, Possu:
How can the protein design community best support biologists who want to harness AI tools for protein structure prediction and design?
In: Cell Systems. Bd. 14 (2023) Heft 8 . - S. 629-632.
DOI: https://doi.org/10.1016/j.cels.2023.07.005
How can the protein design community best support biologists who want to harness AI tools for protein structure prediction and design?
In: Cell Systems. Bd. 14 (2023) Heft 8 . - S. 629-632.
DOI: https://doi.org/10.1016/j.cels.2023.07.005
Höcker, Birte ; Zielonka, Stefan:
Protein engineering & design : hitting new heights.
In: Biological Chemistry. Bd. 403 (2022) Heft 5-6 . - S. 453.
DOI: https://doi.org/10.1515/hsz-2022-0139
Protein engineering & design : hitting new heights.
In: Biological Chemistry. Bd. 403 (2022) Heft 5-6 . - S. 453.
DOI: https://doi.org/10.1515/hsz-2022-0139
Herud-Sikimić, Ole ; Stiel, André C. ; Kolb, Martina ; Shanmugaratnam, Sooruban ; Berendzen, Kenneth W. ; Feldhaus, Christian ; Höcker, Birte ; Jürgens, Gerd:
A biosensor for the direct visualization of auxin.
In: Nature. Bd. 592 (2021) Heft 7856 . - S. 768-772.
DOI: https://doi.org/10.1038/s41586-021-03425-2
A biosensor for the direct visualization of auxin.
In: Nature. Bd. 592 (2021) Heft 7856 . - S. 768-772.
DOI: https://doi.org/10.1038/s41586-021-03425-2
Höcker, Birte ; Winther, Jakob R.:
Editorial overview : A perspective on protein evolution.
In: Current Opinion in Structural Biology. Bd. 48 (2018) . - S. viii-ix.
DOI: https://doi.org/10.1016/j.sbi.2018.01.013
Editorial overview : A perspective on protein evolution.
In: Current Opinion in Structural Biology. Bd. 48 (2018) . - S. viii-ix.
DOI: https://doi.org/10.1016/j.sbi.2018.01.013
Huang, Po-Ssu ; Feldmeier, Kaspar ; Parmeggiani, Fabio ; Velasco, D Alejandro Fernandez ; Höcker, Birte ; Baker, David:
De novo design of a four-fold symmetric TIM-barrel protein with atomic-level accuracy.
In: Nature Chemical Biology. Bd. 12 (2016) Heft 1 . - S. 29-34.
DOI: https://doi.org/10.1038/nchembio.1966
De novo design of a four-fold symmetric TIM-barrel protein with atomic-level accuracy.
In: Nature Chemical Biology. Bd. 12 (2016) Heft 1 . - S. 29-34.
DOI: https://doi.org/10.1038/nchembio.1966
Höcker, Birte:
Design of proteins from smaller fragments : learning from evolution.
In: Current Opinion in Structural Biology. Bd. 27 (2014) . - S. 56-62.
DOI: https://doi.org/10.1016/j.sbi.2014.04.007
Design of proteins from smaller fragments : learning from evolution.
In: Current Opinion in Structural Biology. Bd. 27 (2014) . - S. 56-62.
DOI: https://doi.org/10.1016/j.sbi.2014.04.007
Höcker, Birte ; Midelfort, Katarina:
Designing protein function : macromolecular design.
In: Journal of Structural Biology. Bd. 185 (2014) Heft 2 . - S. 135.
DOI: https://doi.org/10.1016/j.jsb.2014.01.011
Designing protein function : macromolecular design.
In: Journal of Structural Biology. Bd. 185 (2014) Heft 2 . - S. 135.
DOI: https://doi.org/10.1016/j.jsb.2014.01.011
Höcker, Birte:
Engineering chimaeric proteins from fold fragments : "hopeful monsters" in protein design.
In: Biochemical Society Transactions. Bd. 41 (2013) Heft 5 . - S. 1137-1140.
DOI: https://doi.org/10.1042/BST20130099
Engineering chimaeric proteins from fold fragments : "hopeful monsters" in protein design.
In: Biochemical Society Transactions. Bd. 41 (2013) Heft 5 . - S. 1137-1140.
DOI: https://doi.org/10.1042/BST20130099
Höcker, Birte:
Protein design : A metalloenzyme reloaded.
In: Nature Chemical Biology. Bd. 8 (2012) Heft 3 . - S. 224-225.
DOI: https://doi.org/10.1038/nchembio.800
Protein design : A metalloenzyme reloaded.
In: Nature Chemical Biology. Bd. 8 (2012) Heft 3 . - S. 224-225.
DOI: https://doi.org/10.1038/nchembio.800
Höcker, Birte:
Structural biology : A toolbox for protein design.
In: Nature. Bd. 491 (2012) Heft 7423 . - S. 204-205.
DOI: https://doi.org/10.1038/491204a
Structural biology : A toolbox for protein design.
In: Nature. Bd. 491 (2012) Heft 7423 . - S. 204-205.
DOI: https://doi.org/10.1038/491204a
Höcker, Birte:
Metals make proteins stick.
In: Chemistry & Biology. Bd. 17 (2010) Heft 2 . - S. 103-104.
DOI: https://doi.org/10.1016/j.chembiol.2010.02.002
Metals make proteins stick.
In: Chemistry & Biology. Bd. 17 (2010) Heft 2 . - S. 103-104.
DOI: https://doi.org/10.1016/j.chembiol.2010.02.002
Höcker, Birte ; Lochner, Adriane ; Seitz, Tobias ; Claren, Jörg ; Sterner, Reinhard:
High-resolution crystal structure of an artificial (βα)₈-barrel protein designed from identical half-barrels.
In: Biochemistry. Bd. 48 (2009) Heft 6 . - S. 1145-1147.
DOI: https://doi.org/10.1021/bi802125b
High-resolution crystal structure of an artificial (βα)₈-barrel protein designed from identical half-barrels.
In: Biochemistry. Bd. 48 (2009) Heft 6 . - S. 1145-1147.
DOI: https://doi.org/10.1021/bi802125b
Höcker, Birte:
Directed evolution of (βα)₈-barrel enzymes.
In: Biomolecular Engineering. Bd. 22 (2005) Heft 1-3 . - S. 31-38.
DOI: https://doi.org/10.1016/j.bioeng.2004.09.005
Directed evolution of (βα)₈-barrel enzymes.
In: Biomolecular Engineering. Bd. 22 (2005) Heft 1-3 . - S. 31-38.
DOI: https://doi.org/10.1016/j.bioeng.2004.09.005
Höcker, Birte ; Schmidt, Steffen ; Sterner, Reinhard:
A common evolutionary origin of two elementary enzyme folds.
In: FEBS Letters. Bd. 510 (2002) Heft 3 . - S. 133-135.
DOI: https://doi.org/10.1016/S0014-5793(01)03232-X
A common evolutionary origin of two elementary enzyme folds.
In: FEBS Letters. Bd. 510 (2002) Heft 3 . - S. 133-135.
DOI: https://doi.org/10.1016/S0014-5793(01)03232-X
Höcker, Birte ; Beismann-Driemeyer, Silke ; Hettwer, Stefan ; Lustig, Ariel ; Sterner, Reinhard:
Dissection of a (betaalpha)8-barrel enzyme into two folded halves.
In: Nature Structural Biology. Bd. 8 (2001) Heft 1 . - S. 32-36.
DOI: https://doi.org/10.1038/83021
Dissection of a (betaalpha)8-barrel enzyme into two folded halves.
In: Nature Structural Biology. Bd. 8 (2001) Heft 1 . - S. 32-36.
DOI: https://doi.org/10.1038/83021
Henn-Sax, Martina ; Höcker, Birte ; Wilmanns, Matthias ; Sterner, Reinhard:
Divergent evolution of (β⍺)₈-barrel enzymes.
In: Biological Chemistry. Bd. 382 (2001) Heft 9 . - S. 1315-1320.
DOI: https://doi.org/10.1515/BC.2001.163
Divergent evolution of (β⍺)₈-barrel enzymes.
In: Biological Chemistry. Bd. 382 (2001) Heft 9 . - S. 1315-1320.
DOI: https://doi.org/10.1515/BC.2001.163
Höcker, Birte ; Jürgens, Catharina ; Wilmanns, Matthias ; Sterner, Reinhard:
Stability, catalytic versatility and evolution of the (betaalpha)(8)-barrel fold.
In: Current Opinion in Biotechnology. Bd. 12 (2001) Heft 4 . - S. 376-381.
DOI: https://doi.org/10.1016/S0958-1669(00)00230-5
Stability, catalytic versatility and evolution of the (betaalpha)(8)-barrel fold.
In: Current Opinion in Biotechnology. Bd. 12 (2001) Heft 4 . - S. 376-381.
DOI: https://doi.org/10.1016/S0958-1669(00)00230-5
K
Kröger, Pascal ; Stiel, Andre C. ; Stüven, Birthe ; Shanmugaratnam, Sooruban ; Schoch, Susanne ; Wachten, Dagmar ; Höcker, Birte:
A fluorescent biosensor for the visualization of agmatine.
Bayreuth , 2024
DOI: https://doi.org/10.1101/2024.07.27.605435
A fluorescent biosensor for the visualization of agmatine.
Bayreuth , 2024
DOI: https://doi.org/10.1101/2024.07.27.605435
Koch, Johanna-Sophie ; Romero-Romero, Sergio ; Höcker, Birte:
Stepwise introduction of stabilizing mutations reveals nonlinear additive effects in de novo TIM barrels.
In: Protein Science. Bd. 33 (2024) Heft 3 . - e4926.
DOI: https://doi.org/10.1002/pro.4926
Stepwise introduction of stabilizing mutations reveals nonlinear additive effects in de novo TIM barrels.
In: Protein Science. Bd. 33 (2024) Heft 3 . - e4926.
DOI: https://doi.org/10.1002/pro.4926
Kynast, Josef:
Towards Modular Protein Detection : Computational Methods to Support the Design of Peptide-Binding Pockets.
Bayreuth , 2024 . - X, 83 S.
( Dissertation, 2024 , Universität Bayreuth, Fakultät für Biologie, Chemie und Geowissenschaften)
DOI: https://doi.org/10.15495/EPub_UBT_00007497
Towards Modular Protein Detection : Computational Methods to Support the Design of Peptide-Binding Pockets.
Bayreuth , 2024 . - X, 83 S.
( Dissertation, 2024 , Universität Bayreuth, Fakultät für Biologie, Chemie und Geowissenschaften)
DOI: https://doi.org/10.15495/EPub_UBT_00007497
Kynast, Josef ; Höcker, Birte:
Atligator Web: A Graphical User Interface for Analysis and Design of Protein–Peptide Interactions.
In: BioDesign Research. Bd. 5 (2023) . - 0011.
DOI: https://doi.org/10.34133/bdr.0011
Atligator Web: A Graphical User Interface for Analysis and Design of Protein–Peptide Interactions.
In: BioDesign Research. Bd. 5 (2023) . - 0011.
DOI: https://doi.org/10.34133/bdr.0011
Kordes, Sina ; Beck, Julian ; Shanmugaratnam, Sooruban ; Flecks, Merle ; Höcker, Birte:
Physics-based approach to extend a de novo TIM barrel with rationally designed helix-loop-helix motifs.
In: Protein Engineering, Design & Selection. Bd. 36 (2023) . - gzad012.
DOI: https://doi.org/10.1093/protein/gzad012
Physics-based approach to extend a de novo TIM barrel with rationally designed helix-loop-helix motifs.
In: Protein Engineering, Design & Selection. Bd. 36 (2023) . - gzad012.
DOI: https://doi.org/10.1093/protein/gzad012
Kordes, Sina:
TIM Barrels 2.0 – Stabilizing and Diversifying a De Novo Designed Protein.
Bayreuth , 2023 . - ii, 190 S.
( Dissertation, 2022 , Universität Bayreuth, Fakultät für Biologie, Chemie und Geowissenschaften)
DOI: https://doi.org/10.15495/EPub_UBT_00006859
TIM Barrels 2.0 – Stabilizing and Diversifying a De Novo Designed Protein.
Bayreuth , 2023 . - ii, 190 S.
( Dissertation, 2022 , Universität Bayreuth, Fakultät für Biologie, Chemie und Geowissenschaften)
DOI: https://doi.org/10.15495/EPub_UBT_00006859
Kynast, Josef ; Schwägerl, Felix ; Höcker, Birte:
ATLIGATOR : editing protein interactions with an atlas-based approach.
In: Bioinformatics. Bd. 38 (2022) Heft 23 . - S. 5199-5205.
DOI: https://doi.org/10.1093/bioinformatics/btac685
ATLIGATOR : editing protein interactions with an atlas-based approach.
In: Bioinformatics. Bd. 38 (2022) Heft 23 . - S. 5199-5205.
DOI: https://doi.org/10.1093/bioinformatics/btac685
Kordes, Sina ; Romero-Romero, Sergio ; Lutz, Leonie ; Höcker, Birte:
A newly introduced salt bridge cluster improves structural and biophysical properties of de novo TIM barrels.
In: Protein Science. Bd. 31 (2022) Heft 2 . - S. 513-527.
DOI: https://doi.org/10.1002/pro.4249
A newly introduced salt bridge cluster improves structural and biophysical properties of de novo TIM barrels.
In: Protein Science. Bd. 31 (2022) Heft 2 . - S. 513-527.
DOI: https://doi.org/10.1002/pro.4249
Kröger, Pascal ; Shanmugaratnam, Sooruban ; Scheib, Ulrike ; Höcker, Birte:
Fine-tuning spermidine binding modes in the putrescine binding protein PotF.
In: The Journal of Biological Chemistry. Bd. 297 (2021) Heft 6 . - 101419.
DOI: https://doi.org/10.15495/EPub_UBT_00006574
Fine-tuning spermidine binding modes in the putrescine binding protein PotF.
In: The Journal of Biological Chemistry. Bd. 297 (2021) Heft 6 . - 101419.
DOI: https://doi.org/10.15495/EPub_UBT_00006574
L
Lechner, Horst ; Emann, Vincent R. ; Breuning, Matthias ; Höcker, Birte:
An Artificial Cofactor Catalyzing the Baylis-Hillman Reaction with Designed Streptavidin as Protein Host.
In: ChemBioChem. Bd. 22 (2021) Heft 9 . - S. 1573-1577.
DOI: https://doi.org/10.1002/cbic.202000880
An Artificial Cofactor Catalyzing the Baylis-Hillman Reaction with Designed Streptavidin as Protein Host.
In: ChemBioChem. Bd. 22 (2021) Heft 9 . - S. 1573-1577.
DOI: https://doi.org/10.1002/cbic.202000880
Linke, Heiner ; Höcker, Birte ; Furuta, Ken'ya ; Forde, Nancy R. ; Curmi, Paul M. G.:
Synthetic biology approaches to dissecting linear motor protein function : towards the design and synthesis of artificial autonomous protein walkers.
In: Biophysical Reviews. Bd. 12 (2020) Heft 4 . - S. 1041-1054.
DOI: https://doi.org/10.1007/s12551-020-00717-1
Synthetic biology approaches to dissecting linear motor protein function : towards the design and synthesis of artificial autonomous protein walkers.
In: Biophysical Reviews. Bd. 12 (2020) Heft 4 . - S. 1041-1054.
DOI: https://doi.org/10.1007/s12551-020-00717-1
Lichtenstein, Bruce R. ; Höcker, Birte:
Engineering an AB₅ Protein Carrier.
In: Scientific Reports. Bd. 8 (2018) . - 12643.
DOI: https://doi.org/10.1038/s41598-018-30910-y
Engineering an AB₅ Protein Carrier.
In: Scientific Reports. Bd. 8 (2018) . - 12643.
DOI: https://doi.org/10.1038/s41598-018-30910-y
Lechner, Horst ; Ferruz, Noelia ; Höcker, Birte:
Strategies for designing non-natural enzymes and binders.
In: Current Opinion in Chemical Biology. Bd. 47 (2018) . - S. 67-76.
DOI: https://doi.org/10.1016/j.cbpa.2018.07.022
Strategies for designing non-natural enzymes and binders.
In: Current Opinion in Chemical Biology. Bd. 47 (2018) . - S. 67-76.
DOI: https://doi.org/10.1016/j.cbpa.2018.07.022
M
Michel, Florian ; Romero-Romero, Sergio ; Höcker, Birte:
Retracing the evolution of a modern periplasmic binding protein.
In: Protein Science. Bd. 32 (2023) Heft 11 . - e4793.
DOI: https://doi.org/10.1002/pro.4793
Retracing the evolution of a modern periplasmic binding protein.
In: Protein Science. Bd. 32 (2023) Heft 11 . - e4793.
DOI: https://doi.org/10.1002/pro.4793
Michel, Florian ; Shanmugaratnam, Sooruban ; Romero-Romero, Sergio ; Höcker, Birte:
Structures of permuted halves of a modern ribose-binding protein.
In: Acta Crystallographica Section D Structural Biology. Bd. 79 (2023) . - S. 40-49.
DOI: https://doi.org/10.1107/S205979832201186X
Structures of permuted halves of a modern ribose-binding protein.
In: Acta Crystallographica Section D Structural Biology. Bd. 79 (2023) . - S. 40-49.
DOI: https://doi.org/10.1107/S205979832201186X
Menzel, Teresa ; Weigert, Sebastian ; Gagsteiger, Andreas ; Eich, Yannik ; Sittl, Sebastian ; Papastavrou, Georg ; Ruckdäschel, Holger ; Altstädt, Volker ; Höcker, Birte:
Impact of Enzymatic Degradation on the Material Properties of Poly(Ethylene Terephthalate).
In: Polymers. Bd. 13 (2021) Heft 22 . - 3885.
DOI: https://doi.org/10.3390/polym13223885
Impact of Enzymatic Degradation on the Material Properties of Poly(Ethylene Terephthalate).
In: Polymers. Bd. 13 (2021) Heft 22 . - 3885.
DOI: https://doi.org/10.3390/polym13223885
Meier, Monika M. ; Rajendran, Chitra ; Malisi, Christoph ; Fox, Nicholas G. ; Xu, Chengfu ; Schlee, Sandra ; Barondeau, David P. ; Höcker, Birte ; Sterner, Reinhard ; Raushel, Frank M.:
Molecular engineering of organophosphate hydrolysis activity from a weak promiscuous lactonase template.
In: Journal of the American Chemical Society. Bd. 135 (2013) Heft 31 . - S. 11670-11677.
DOI: https://doi.org/10.1021/ja405911h
Molecular engineering of organophosphate hydrolysis activity from a weak promiscuous lactonase template.
In: Journal of the American Chemical Society. Bd. 135 (2013) Heft 31 . - S. 11670-11677.
DOI: https://doi.org/10.1021/ja405911h
Malisi, Christoph ; Schumann, Marcel ; Toussaint, Nora C ; Kageyama, Jorge ; Kohlbacher, Oliver ; Höcker, Birte:
Binding pocket optimization by computational protein design.
In: PLoS One. Bd. 7 (2012) Heft 12 . - e52505.
DOI: https://doi.org/10.1371/journal.pone.0052505
Binding pocket optimization by computational protein design.
In: PLoS One. Bd. 7 (2012) Heft 12 . - e52505.
DOI: https://doi.org/10.1371/journal.pone.0052505
Malisi, Christoph ; Stiel, André C. ; Höcker, Birte:
Enzyme am Reißbrett.
In: BIOspektrum. Bd. 17 (2011) Heft 7 . - S. 736-738.
DOI: https://doi.org/10.1007/s12268-011-0117-0
Enzyme am Reißbrett.
In: BIOspektrum. Bd. 17 (2011) Heft 7 . - S. 736-738.
DOI: https://doi.org/10.1007/s12268-011-0117-0
Malisi, Christoph ; Kohlbacher, Oliver ; Höcker, Birte:
Automated scaffold selection for enzyme design.
In: Proteins. Bd. 77 (2009) Heft 1 . - S. 74-83.
DOI: https://doi.org/10.1002/prot.22418
Automated scaffold selection for enzyme design.
In: Proteins. Bd. 77 (2009) Heft 1 . - S. 74-83.
DOI: https://doi.org/10.1002/prot.22418
N
Nilsson, Patrik Felix ; Zink, Anna ; Laprévote, Olivier ; Korosec, Chapin S. ; Gustafsson, Nils ; Robertson, Neil O. ; Forde, Nancy ; Eichhorn, Ralf ; Höcker, Birte ; Curmi, Paul ; Linke, Heiner:
Walking by design: how to build artificial molecular motors made of proteins.
Bayreuth , 2024
DOI: https://doi.org/10.1088/2399-1984/ad7d7e
Walking by design: how to build artificial molecular motors made of proteins.
Bayreuth , 2024
DOI: https://doi.org/10.1088/2399-1984/ad7d7e
Noske, Jakob ; Kynast, Josef ; Lemm, Dominik ; Schmidt, Steffen ; Höcker, Birte:
PocketOptimizer 2.0 : A modular framework for computer‐aided ligand‐binding design.
In: Protein Science. Bd. 32 (2023) Heft 1 . - e4516.
DOI: https://doi.org/10.1002/pro.4516
PocketOptimizer 2.0 : A modular framework for computer‐aided ligand‐binding design.
In: Protein Science. Bd. 32 (2023) Heft 1 . - e4516.
DOI: https://doi.org/10.1002/pro.4516
R
Rydzek, Simon ; Guth, Florian ; Friedrich, Steffen ; Noske, Jakob ; Höcker, Birte ; Hahn, Frank:
Chemoenzymatic Synthesis of Plant‐Derived Kavalactone Natural Products by Dynamic Resolution Using a Biosynthetic O‐Methyltransferase Tailoring Enzyme.
In: ChemCatChem. (2024) . - e202400883.
DOI: https://doi.org/10.1002/cctc.202400883
Chemoenzymatic Synthesis of Plant‐Derived Kavalactone Natural Products by Dynamic Resolution Using a Biosynthetic O‐Methyltransferase Tailoring Enzyme.
In: ChemCatChem. (2024) . - e202400883.
DOI: https://doi.org/10.1002/cctc.202400883
Rhys, Guto G. ; Cross, Jessica A. ; Dawson, William M. ; Thompson, Harry F. ; Shanmugaratnam, Sooruban ; Savery, Nigel J. ; Dodding, Mark P. ; Höcker, Birte ; Woolfson, Derek N.:
De novo designed peptides for cellular delivery and subcellular localisation.
In: Nature Chemical Biology. Bd. 18 (2022) Heft 9 . - S. 999-1004.
DOI: https://doi.org/10.1038/s41589-022-01076-6
De novo designed peptides for cellular delivery and subcellular localisation.
In: Nature Chemical Biology. Bd. 18 (2022) Heft 9 . - S. 999-1004.
DOI: https://doi.org/10.1038/s41589-022-01076-6
Romero-Romero, Sergio ; Kordes, Sina ; Michel, Florian ; Höcker, Birte:
Evolution, folding, and design of TIM barrels and related proteins.
In: Current Opinion in Structural Biology. Bd. 68 (2021) . - S. 94-104.
DOI: https://doi.org/10.1016/j.sbi.2020.12.007
Evolution, folding, and design of TIM barrels and related proteins.
In: Current Opinion in Structural Biology. Bd. 68 (2021) . - S. 94-104.
DOI: https://doi.org/10.1016/j.sbi.2020.12.007
Romero-Romero, Sergio ; Costas, Miguel ; Silva Manzano, Daniel-Adriano ; Kordes, Sina ; Rojas-Ortega, Erendira ; Tapia, Cinthya ; Guerra, Yasel ; Shanmugaratnam, Sooruban ; Rodríguez-Romero, Adela ; Baker, David ; Höcker, Birte ; Fernández-Velasco, D. Alejandro:
The Stability Landscape of de novo TIM Barrels Explored by a Modular Design Approach.
In: Journal of Molecular Biology. Bd. 433 (2021) Heft 18 . - 167153.
DOI: https://doi.org/10.1016/j.jmb.2021.167153
The Stability Landscape of de novo TIM Barrels Explored by a Modular Design Approach.
In: Journal of Molecular Biology. Bd. 433 (2021) Heft 18 . - 167153.
DOI: https://doi.org/10.1016/j.jmb.2021.167153
Reetz, Manfred T. ; Rentzsch, Martin ; Pletsch, Andreas ; Taglieber, Andreas ; Hollmann, Frank ; Mondière, Régis J. G. ; Dickmann, Norbert ; Höcker, Birte ; Cerrone, Simona ; Haeger, Michaela C. ; Sterner, Reinhard:
A robust protein host for anchoring chelating ligands and organocatalysts.
In: ChemBioChem. Bd. 9 (2008) Heft 4 . - S. 552-564.
DOI: https://doi.org/10.1002/cbic.200700413
A robust protein host for anchoring chelating ligands and organocatalysts.
In: ChemBioChem. Bd. 9 (2008) Heft 4 . - S. 552-564.
DOI: https://doi.org/10.1002/cbic.200700413
Raasch, Carsten ; Armbrecht, Martin ; Streit, Wolfgang R. ; Höcker, Birte ; Sträter, Norbert ; Liebl, Wolfgang:
Identification of residues important for NAD+ binding by the Thermotoga maritima alpha-glucosidase AglA, a member of glycoside hydrolase family 4.
In: FEBS Letters. Bd. 517 (2002) Heft 1-3 . - S. 267-271.
DOI: https://doi.org/10.1016/S0014-5793(02)02641-8
Identification of residues important for NAD+ binding by the Thermotoga maritima alpha-glucosidase AglA, a member of glycoside hydrolase family 4.
In: FEBS Letters. Bd. 517 (2002) Heft 1-3 . - S. 267-271.
DOI: https://doi.org/10.1016/S0014-5793(02)02641-8
S
Sterner, Reinhard ; Höcker, Birte ; Kolmar, Harald:
Highlight issue: protein design.
In: Biological Chemistry. Bd. 398 (2017) Heft 1 . - S. 1-2.
DOI: https://doi.org/10.1515/hsz-2016-0322
Highlight issue: protein design.
In: Biological Chemistry. Bd. 398 (2017) Heft 1 . - S. 1-2.
DOI: https://doi.org/10.1515/hsz-2016-0322
Stiel, André C. ; Nellen, Mehdi ; Höcker, Birte:
PocketOptimizer and the Design of Ligand Binding Sites.
In: Stoddard, Barry L. (Hrsg.): Computational Design of Ligand Binding Proteins. - New York : Humana Press, 2016 . - S. 63-75 . - (Methods in Molecular Biology ; 1414 )
DOI: https://doi.org/10.1007/978-1-4939-3569-7_5
PocketOptimizer and the Design of Ligand Binding Sites.
In: Stoddard, Barry L. (Hrsg.): Computational Design of Ligand Binding Proteins. - New York : Humana Press, 2016 . - S. 63-75 . - (Methods in Molecular Biology ; 1414 )
DOI: https://doi.org/10.1007/978-1-4939-3569-7_5
Scheib, Ulrike ; Shanmugaratnam, Sooruban ; Farías-Rico, José Arcadio ; Höcker, Birte:
Change in protein-ligand specificity through binding pocket grafting.
In: Journal of Structural Biology. Bd. 185 (2014) Heft 2 . - S. 186-192.
DOI: https://doi.org/10.1016/j.jsb.2013.06.002
Change in protein-ligand specificity through binding pocket grafting.
In: Journal of Structural Biology. Bd. 185 (2014) Heft 2 . - S. 186-192.
DOI: https://doi.org/10.1016/j.jsb.2013.06.002
Stiel, André C. ; Feldmeier, Kaspar ; Höcker, Birte:
Identification of protein scaffolds for enzyme design using scaffold selection.
In: Köhler, Valentin (Hrsg.): Protein design : methods and applications. 2nd Edition. - New York, NY : Humana Press, 2014 . - S. 183-196 . - (Methods in Molecular Biology ; 1216 )
DOI: https://doi.org/10.1007/978-1-4939-1486-9_9
Identification of protein scaffolds for enzyme design using scaffold selection.
In: Köhler, Valentin (Hrsg.): Protein design : methods and applications. 2nd Edition. - New York, NY : Humana Press, 2014 . - S. 183-196 . - (Methods in Molecular Biology ; 1216 )
DOI: https://doi.org/10.1007/978-1-4939-1486-9_9
Shanmugaratnam, Sooruban ; Eisenbeis, Simone ; Höcker, Birte:
A highly stable protein chimera built from fragments of different folds.
In: Protein Engineering, Design & Selection. Bd. 25 (2012) Heft 11 . - S. 699-703.
DOI: https://doi.org/10.1093/protein/gzs074
A highly stable protein chimera built from fragments of different folds.
In: Protein Engineering, Design & Selection. Bd. 25 (2012) Heft 11 . - S. 699-703.
DOI: https://doi.org/10.1093/protein/gzs074
Schreier, Bettina ; Höcker, Birte:
Engineering the enolase magnesium II binding site: implications for its evolution.
In: Biochemistry. Bd. 49 (2010) Heft 35 . - S. 7582-7589.
DOI: https://doi.org/10.1021/bi100954f
Engineering the enolase magnesium II binding site: implications for its evolution.
In: Biochemistry. Bd. 49 (2010) Heft 35 . - S. 7582-7589.
DOI: https://doi.org/10.1021/bi100954f
Schreier, Bettina ; Stumpp, Christian ; Wiesner, Silke ; Höcker, Birte:
Computational design of ligand binding is not a solved problem.
In: Proceedings of the National Academy of Sciences of the United States of America. Bd. 106 (2009) Heft 44 . - S. 18491-18496.
DOI: https://doi.org/10.1073/pnas.0907950106
Computational design of ligand binding is not a solved problem.
In: Proceedings of the National Academy of Sciences of the United States of America. Bd. 106 (2009) Heft 44 . - S. 18491-18496.
DOI: https://doi.org/10.1073/pnas.0907950106
Sterner, Reinhard ; Höcker, Birte:
Catalytic versatility, stability, and evolution of the (betaalpha)8-barrel enzyme fold.
In: Chemical Reviews. Bd. 105 (2005) Heft 11 . - S. 4038-4055.
DOI: https://doi.org/10.1021/cr030191z
Catalytic versatility, stability, and evolution of the (betaalpha)8-barrel enzyme fold.
In: Chemical Reviews. Bd. 105 (2005) Heft 11 . - S. 4038-4055.
DOI: https://doi.org/10.1021/cr030191z
T
Toledo‐Patiño, Saacnicteh ; Goetz, Sara Kathrin ; Shanmugaratnam, Sooruban ; Höcker, Birte ; Farías‐Rico, José Arcadio:
Molecular handcraft of a well‐folded protein chimera.
In: FEBS Letters. Bd. 598 (2024) Heft 11 . - S. 1375-1386.
DOI: https://doi.org/10.1002/1873-3468.14856
Molecular handcraft of a well‐folded protein chimera.
In: FEBS Letters. Bd. 598 (2024) Heft 11 . - S. 1375-1386.
DOI: https://doi.org/10.1002/1873-3468.14856
Toledo-Patiño, Saacnicteh ; Chaubey, Manish ; Coles, Murray ; Höcker, Birte:
Reconstructing the Remote Origins of a Fold Singleton from a Flavodoxin-Like Ancestor.
In: Biochemistry. Bd. 58 (2019) Heft 48 . - S. 4790-4793.
DOI: https://doi.org/10.1021/acs.biochem.9b00900
Reconstructing the Remote Origins of a Fold Singleton from a Flavodoxin-Like Ancestor.
In: Biochemistry. Bd. 58 (2019) Heft 48 . - S. 4790-4793.
DOI: https://doi.org/10.1021/acs.biochem.9b00900
Toledo-Patiño, Saacnicteh ; Lobos, Francisco ; Höcker, Birte:
Baukasten der Natur : Neue Proteine aus konservierten Fragmenten.
In: BIOspektrum. Bd. 23 (2017) Heft 6 . - S. 630-633.
DOI: https://doi.org/10.1007/s12268-017-0847-8
Baukasten der Natur : Neue Proteine aus konservierten Fragmenten.
In: BIOspektrum. Bd. 23 (2017) Heft 6 . - S. 630-633.
DOI: https://doi.org/10.1007/s12268-017-0847-8
W
Weigert, Sebastian ; Perez‐Garcia, Pablo ; Gisdon, Florian J. ; Gagsteiger, Andreas ; Schweinshaut, Kristine ; Ullmann, G. Matthias ; Chow, Jennifer ; Streit, Wolfgang R. ; Höcker, Birte:
Investigation of the halophilic PET hydrolase PET6 from Vibrio gazogenes.
In: Protein Science. Bd. 31 (2022) Heft 12 . - e4500.
DOI: https://doi.org/10.1002/pro.4500
Investigation of the halophilic PET hydrolase PET6 from Vibrio gazogenes.
In: Protein Science. Bd. 31 (2022) Heft 12 . - e4500.
DOI: https://doi.org/10.1002/pro.4500
Weigert, Sebastian:
Investigation of PET-degrading enzymes and their implications on microplastics.
Bayreuth , 2022 . - IV, 112 S.
( Dissertation, 2022 , Universität Bayreuth, Fakultät für Biologie, Chemie und Geowissenschaften)
DOI: https://doi.org/10.15495/EPub_UBT_00006729
Investigation of PET-degrading enzymes and their implications on microplastics.
Bayreuth , 2022 . - IV, 112 S.
( Dissertation, 2022 , Universität Bayreuth, Fakultät für Biologie, Chemie und Geowissenschaften)
DOI: https://doi.org/10.15495/EPub_UBT_00006729
Wiese, Jonas Gregor ; Shanmugaratnam, Sooruban ; Höcker, Birte:
Extension of a de novo TIM barrel with a rationally designed secondary structure element.
In: Protein Science. Bd. 30 (2021) Heft 5 . - S. 982-989.
DOI: https://doi.org/10.1002/pro.4064
Extension of a de novo TIM barrel with a rationally designed secondary structure element.
In: Protein Science. Bd. 30 (2021) Heft 5 . - S. 982-989.
DOI: https://doi.org/10.1002/pro.4064
Weigert, Sebastian ; Gagsteiger, Andreas ; Menzel, Teresa ; Höcker, Birte:
A versatile assay platform for enzymatic poly(ethylene-terephthalate) degradation.
In: Protein Engineering, Design & Selection. Bd. 34 (2021) . - S. 1-9.
DOI: https://doi.org/10.1093/protein/gzab022
A versatile assay platform for enzymatic poly(ethylene-terephthalate) degradation.
In: Protein Engineering, Design & Selection. Bd. 34 (2021) . - S. 1-9.
DOI: https://doi.org/10.1093/protein/gzab022
Y
You, Weijie:
Activation and inhibition of Sirt6 by small molecules.
Bayreuth , 2019 . - 120 S.
( Dissertation, 2019 , Universität Bayreuth, Fakultät für Biologie, Chemie und Geowissenschaften)
DOI: https://doi.org/10.15495/EPub_UBT_00004450
Activation and inhibition of Sirt6 by small molecules.
Bayreuth , 2019 . - 120 S.
( Dissertation, 2019 , Universität Bayreuth, Fakultät für Biologie, Chemie und Geowissenschaften)
DOI: https://doi.org/10.15495/EPub_UBT_00004450
Z
Zhang, Hongli ; Perez-Garcia, Pablo ; Dierkes, Robert F. ; Applegate, Violetta ; Schumacher, Julia ; Chibani, Cynthia Maria ; Sternagel, Stefanie ; Preuss, Lena ; Weigert, Sebastian ; Schmeisser, Christel ; Danso, Dominik ; Pleiss, Juergen ; Almeida, Alexandre ; Höcker, Birte ; Hallam, Steven J. ; Schmitz, Ruth A. ; Smits, Sander H. J. ; Chow, Jennifer ; Streit, Wolfgang R.:
The Bacteroidetes Aequorivita sp. and Kaistella jeonii Produce Promiscuous Esterases With PET-Hydrolyzing Activity.
In: Frontiers in Microbiology. Bd. 12 (2021) . - 803896.
DOI: https://doi.org/10.3389/fmicb.2021.803896
The Bacteroidetes Aequorivita sp. and Kaistella jeonii Produce Promiscuous Esterases With PET-Hydrolyzing Activity.
In: Frontiers in Microbiology. Bd. 12 (2021) . - 803896.
DOI: https://doi.org/10.3389/fmicb.2021.803896
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